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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1795-RA through 18771 annotations produced 1 hits



Ogg1 (Ogg1):

Annotation Number : CG1795
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027864
Gbrowse : chrX:8584406-8585837 (+) // 100.0 //
Probeset : 1636807_at
Accessions : protein= NP_572499;, nucleotide= NM_132271;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : "0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from elect
FlyMine data for FBgn0027864.
Homophila reports that CG1795 is a close match (3e-19) to human gene OGG1 (NP_058436), a gene associated with Renal cell carcinoma, clear cell, somatic, 144700 (3).
VDRC has 3 RNAi stocks for FBgn0027864 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 24 of 4 0.90None
Head60 54 of 4 0.80Down
Eye75 24 of 4 0.95None
Thoracicoabdominal ganglion87 24 of 4 1.10None
Salivary gland136 74 of 4 1.71Up
Crop91 34 of 4 1.10None
Midgut45 54 of 4 0.60Down
Tubule102 134 of 4 1.30None
Hindgut70 24 of 4 0.90None
Heart67 54 of 4 0.85None
Fat body52 64 of 4 0.65Down
Ovary183 34 of 4 2.30Up
Testis15 14 of 4 0.20Down
Male accessory glands77 34 of 4 1.00None
Virgin spermatheca85 44 of 4 1.07None
Mated spermatheca116 74 of 4 1.46Up
Adult carcass40 14 of 4 0.50Down
Larval CNS77 44 of 4 0.97None
Larval Salivary gland74 54 of 4 0.93None
Larval midgut40 14 of 4 0.51Down
Larval tubule107 64 of 4 1.40Up
Larval hindgut56 04 of 4 0.71Down
Larval fat body45 14 of 4 0.60Down
Larval trachea91 64 of 4 1.15None
Larval carcass41 44 of 4 0.52Down
S2 cells (growing)99 14 of 4 1.25Up
Whole fly79 44 of 4

Looking for CG1795-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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