FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG17952-RB through 18771 annotations produced 1 hits

Lamin B receptor (LBR):

Annotation Number : CG17952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034657
Gbrowse : chr2R:17608001-17611564 (+) // 100.0 //
Probeset : 1641398_s_at
Accessions : protein= NP_611608; /// NP_726114; /// NP_726115;, nucleotide= NM_137764; /// NM_166484; /// NM_166485;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct a
FlyMine data for FBgn0034657.
Homophila reports that CG17952 is a close match (1e-19) to human gene LBR;PHA (NP_919424), a gene associated with Greenberg dysplasia, 215140 (3);Pelger-Huet anomaly, 169400 (3).
BioGrid reports that CG17952 interacts with CG5670 .
TRiP has 1 RNAi stocks for FBgn0034657 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034657 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	34 ± 3	4 of 4	0.40	Down
Head	17 ± 1	3 of 4	0.20	Down
Eye	12 ± 0	3 of 4	0.14	Down
Thoracicoabdominal ganglion	19 ± 3	1 of 4	0.20	Down
Salivary gland	17 ± 2	1 of 4	0.19	Down
Crop	20 ± 3	3 of 4	0.20	Down
Midgut	13 ± 1	1 of 4	0.10	Down
Tubule	18 ± 2	3 of 4	0.20	Down
Hindgut	14 ± 2	2 of 4	0.20	Down
Heart	14 ± 0	4 of 4	0.15	Down
Fat body	24 ± 4	4 of 4	0.26	Down
Ovary	191 ± 10	4 of 4	2.10	Up
Testis	31 ± 1	4 of 4	0.30	Down
Male accessory glands	25 ± 1	4 of 4	0.30	Down
Virgin spermatheca	18 ± 2	4 of 4	0.20	Down
Mated spermatheca	22 ± 3	3 of 4	0.25	Down
Adult carcass	15 ± 5	1 of 4	0.20	Down
Larval CNS	292 ± 33	4 of 4	3.17	Up
Larval Salivary gland	69 ± 5	4 of 4	0.75	None
Larval midgut	21 ± 4	1 of 4	0.23	Down
Larval tubule	15 ± 1	0 of 4	0.20	Down
Larval hindgut	20 ± 2	4 of 4	0.23	Down
Larval fat body	16 ± 2	3 of 4	0.20	Down
Larval trachea	50 ± 9	4 of 4	0.55	None
Larval carcass	75 ± 5	4 of 4	0.82	None
S2 cells (growing)	259 ± 3	4 of 4	2.82	Up
Whole fly	92 ± 14	4 of 4

Looking for CG17952-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720