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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17957-RA through 18771 annotations produced 1 hits



serendipity-alpha (Sry-alpha):

Annotation Number : CG17957
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003510
Gbrowse : chr3R:25866936-25868808 (+) // 100.0 //
Probeset : 1632798_at
Accessions : protein= NP_524580;, nucleotide= NM_079841;
Pathway : actomyosin contractile ring assembly // non-traceable author statement /// 0007010 // cytoskeleton organization // non-
Interpro : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
FlyMine data for FBgn0003510.
BDGP gene expression has embryonic in situ data for Sry-alpha: 19 pix of staining in 4 body parts.
BioGrid reports that CG17957 interacts with CG5323 CG2179 CG2218 CG2998 CG3085 CG3982 CG4463 CG5353 CG6004 CG6606 CG6838 CG7111 CG7326 CG7757 CG7832 CG8439 CG8578 CG9045 CG9170 CG9699 CG9795 CG31359 CG18743 CG31449 CG5834 CG6489 CG31366 .
TRiP has 1 RNAi stocks for FBgn0003510 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003510 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.60None
Head4 10 of 4 0.70None
Eye3 10 of 4 0.68None
Thoracicoabdominal ganglion3 10 of 4 0.60None
Salivary gland5 10 of 4 0.93None
Crop5 20 of 4 0.90None
Midgut1 00 of 4 0.30None
Tubule2 00 of 4 0.40Down
Hindgut3 10 of 4 0.60None
Heart4 10 of 4 0.73None
Fat body6 00 of 4 1.11None
Ovary8 20 of 4 1.40None
Testis11 20 of 4 2.10None
Male accessory glands8 20 of 4 1.40None
Virgin spermatheca2 00 of 4 0.36None
Mated spermatheca2 00 of 4 0.39None
Adult carcass5 20 of 4 1.00None
Larval CNS13 51 of 4 2.35Up
Larval Salivary gland1 00 of 4 0.20Down
Larval midgut1 00 of 4 0.24None
Larval tubule1 00 of 4 0.20Down
Larval hindgut0 00 of 4 0.16Down
Larval fat body1 00 of 4 0.20Down
Larval trachea5 40 of 4 0.93None
Larval carcass3 00 of 4 0.61None
S2 cells (growing)6 10 of 4 1.11None
Whole fly5 10 of 4

Looking for CG17957-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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