FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG17957-RA through 18771 annotations produced 1 hits

serendipity-alpha (Sry-alpha):

Annotation Number : CG17957
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003510
Gbrowse : chr3R:25866936-25868808 (+) // 100.0 //
Probeset : 1632798_at
Accessions : protein= NP_524580;, nucleotide= NM_079841;
Pathway : actomyosin contractile ring assembly // non-traceable author statement /// 0007010 // cytoskeleton organization // non-
Interpro : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
FlyMine data for FBgn0003510.
BDGP gene expression has embryonic in situ data for Sry-alpha: 19 pix of staining in 4 body parts.
BioGrid reports that CG17957 interacts with CG5323 CG2179 CG2218 CG2998 CG3085 CG3982 CG4463 CG5353 CG6004 CG6606 CG6838 CG7111 CG7326 CG7757 CG7832 CG8439 CG8578 CG9045 CG9170 CG9699 CG9795 CG31359 CG18743 CG31449 CG5834 CG6489 CG31366 .
TRiP has 1 RNAi stocks for FBgn0003510 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003510 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	0.60	None
Head	4 ± 1	0 of 4	0.70	None
Eye	3 ± 1	0 of 4	0.68	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.60	None
Salivary gland	5 ± 1	0 of 4	0.93	None
Crop	5 ± 2	0 of 4	0.90	None
Midgut	1 ± 0	0 of 4	0.30	None
Tubule	2 ± 0	0 of 4	0.40	Down
Hindgut	3 ± 1	0 of 4	0.60	None
Heart	4 ± 1	0 of 4	0.73	None
Fat body	6 ± 0	0 of 4	1.11	None
Ovary	8 ± 2	0 of 4	1.40	None
Testis	11 ± 2	0 of 4	2.10	None
Male accessory glands	8 ± 2	0 of 4	1.40	None
Virgin spermatheca	2 ± 0	0 of 4	0.36	None
Mated spermatheca	2 ± 0	0 of 4	0.39	None
Adult carcass	5 ± 2	0 of 4	1.00	None
Larval CNS	13 ± 5	1 of 4	2.35	Up
Larval Salivary gland	1 ± 0	0 of 4	0.20	Down
Larval midgut	1 ± 0	0 of 4	0.24	None
Larval tubule	1 ± 0	0 of 4	0.20	Down
Larval hindgut	0 ± 0	0 of 4	0.16	Down
Larval fat body	1 ± 0	0 of 4	0.20	Down
Larval trachea	5 ± 4	0 of 4	0.93	None
Larval carcass	3 ± 0	0 of 4	0.61	None
S2 cells (growing)	6 ± 1	0 of 4	1.11	None
Whole fly	5 ± 1	0 of 4

Looking for CG17957-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720