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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17958-RA through 18771 annotations produced 1 hits



serendipity delta (Sry-delta):

Annotation Number : CG17958
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003512
Gbrowse : chr3R:25869067-25870613 (+) // 100.0 //
Probeset : 1629270_at
Accessions : protein= NP_524581;, nucleotide= NM_079842;
Pathway : DNA-dependent // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from el
Interpro : embryo // inferred from genetic interaction /// 0008595 // anterior/posterior axis specification
FlyMine data for FBgn0003512.
Homophila reports that CG17958 is a close match (3e-11) to human gene HTX;HTX1;ZIC3 (NP_003404), a gene associated with Heterotaxy, X-linked visceral, 306955 (3).
BioGrid reports that CG17958 interacts with CG1034 .
VDRC has 2 RNAi stocks for FBgn0003512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 54 of 4 1.20Up
Head84 44 of 4 0.70Down
Eye88 44 of 4 0.76Down
Thoracicoabdominal ganglion135 44 of 4 1.20Up
Salivary gland149 124 of 4 1.29None
Crop116 34 of 4 1.00None
Midgut99 84 of 4 0.90None
Tubule67 14 of 4 0.60Down
Hindgut97 34 of 4 0.80Down
Heart86 54 of 4 0.75Down
Fat body88 194 of 4 0.76None
Ovary239 64 of 4 2.10Up
Testis111 24 of 4 1.00None
Male accessory glands163 124 of 4 1.40Up
Virgin spermatheca111 74 of 4 0.96None
Mated spermatheca118 54 of 4 1.02None
Adult carcass85 54 of 4 0.70Down
Larval CNS167 134 of 4 1.44Up
Larval Salivary gland160 74 of 4 1.38Up
Larval midgut91 54 of 4 0.79Down
Larval tubule83 24 of 4 0.70Down
Larval hindgut88 34 of 4 0.77Down
Larval fat body52 54 of 4 0.40Down
Larval trachea140 114 of 4 1.21Up
Larval carcass108 84 of 4 0.93None
S2 cells (growing)141 44 of 4 1.22Up
Whole fly116 24 of 4

Looking for CG17958-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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