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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1796-RA through 18771 annotations produced 1 hits



Transport and Golgi organization 4 (Tango4):

Annotation Number : CG1796
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030365
Gbrowse : chrX:11915096-11916781 (+) // 100.0 //
Probeset : 1625006_at
Accessions : protein= NP_572778;, nucleotide= NM_132550;
Pathway : via spliceosome // inferred by curator /// 0007030 // Golgi organization // inferred from mutant phenotype"
Interpro : 0005829 // cytosol // inferred from direct assay /// 0071011 // precatalytic spliceosome // inferred from direct assay /
FlyMine data for FBgn0030365.
Homophila reports that CG1796 is a close match (9e-13) to human gene CFEOM1;FEOM1;KIAA1708;KIF21A (NP_060111), a gene associated with Fibrosis of extraocular muscles, congenital, 1, 135700 (3).
BioGrid reports that CG1796 interacts with CG7954 .
VDRC has 2 RNAi stocks for FBgn0030365 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 34 of 4 0.70Down
Head64 44 of 4 0.50Down
Eye76 24 of 4 0.59Down
Thoracicoabdominal ganglion77 44 of 4 0.60Down
Salivary gland89 154 of 4 0.68None
Crop79 24 of 4 0.60Down
Midgut50 44 of 4 0.40Down
Tubule71 44 of 4 0.50Down
Hindgut60 24 of 4 0.50Down
Heart55 44 of 4 0.43Down
Fat body66 54 of 4 0.51Down
Ovary266 104 of 4 2.00Up
Testis21 14 of 4 0.20Down
Male accessory glands77 44 of 4 0.60Down
Virgin spermatheca78 34 of 4 0.60Down
Mated spermatheca92 44 of 4 0.71Down
Adult carcass80 114 of 4 0.60Down
Larval CNS223 134 of 4 1.72Up
Larval Salivary gland104 54 of 4 0.80Down
Larval midgut51 54 of 4 0.40Down
Larval tubule87 34 of 4 0.70Down
Larval hindgut64 14 of 4 0.49Down
Larval fat body166 294 of 4 1.30None
Larval trachea136 184 of 4 1.04None
Larval carcass81 54 of 4 0.62Down
S2 cells (growing)125 24 of 4 0.96None
Whole fly130 64 of 4

Looking for CG1796-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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