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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17964-RE through 18771 annotations produced 1 hits



pangolin (pan):

Annotation Number : CG17964
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085432
Gbrowse : chr4:89955-129430 (+) // 100.0 //
Probeset : 1625636_s_at
Accessions : protein= NP_001014685; /// NP_001033798; /// NP_524619; /// NP_726522; /// NP_726523; /// NP_726524; /// NP_726525; /// NP_726526; /// NP_726527; /// NP_726528;, nucleotide= NM_001014685; /// NM_001038709; /// NM_079880; /// NM_166718; /// NM_166719; /// NM_166720; /// NM_166721; /// NM_166722; /// NM_166723; /// NM_166724; /// NM_166724;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development //
Interpro : open tracheal system // inferred from mutant phenotype /// 0035277 // spiracle morphogenesis
FlyMine data for FBgn0085432.
Homophila reports that CG17964 is a close match (4e-42) to human gene TCF4;TCF7L2 (NP_110383), a gene associated with {Diabetes mellitus, type 2, susceptibility to}, 125853 (3).
BioGrid reports that CG17964 interacts with CG1906 CG11579 CG11579 CG11579 CG11579 CG4379 CG10488 CG8384 CG6824 CG2621 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG1857 CG1916 CG7892 CG1451 CG7926 CG7850 .
TRiP has 2 RNAi stocks for FBgn0085432 available for purchase.
VDRC has 3 RNAi stocks for FBgn0085432 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 ± 24 of 4 4.70Up
Head19 ± 14 of 4 0.90None
Eye8 ± 13 of 4 0.39Down
Thoracicoabdominal ganglion29 ± 24 of 4 1.30Up
Salivary gland39 ± 43 of 4 1.71Up
Crop34 ± 34 of 4 1.50Up
Midgut17 ± 14 of 4 0.80Down
Tubule5 ± 00 of 4 0.20Down
Hindgut31 ± 24 of 4 1.40Up
Heart13 ± 23 of 4 0.58Down
Fat body28 ± 24 of 4 1.25Up
Ovary47 ± 24 of 4 2.10Up
Testis27 ± 24 of 4 1.20None
Male accessory glands18 ± 23 of 4 0.80None
Virgin spermatheca15 ± 13 of 4 0.70Down
Mated spermatheca14 ± 14 of 4 0.63Down
Adult carcass35 ± 34 of 4 1.60Up
Larval CNS22 ± 24 of 4 0.99None
Larval Salivary gland23 ± 24 of 4 1.02None
Larval midgut11 ± 13 of 4 0.49Down
Larval tubule21 ± 14 of 4 1.00None
Larval hindgut17 ± 24 of 4 0.79None
Larval fat body42 ± 54 of 4 1.90Up
Larval trachea12 ± 34 of 4 0.53Down
Larval carcass23 ± 44 of 4 1.02None
S2 cells (growing)61 ± 44 of 4 2.70Up
Whole fly22 ± 04 of 4

Looking for CG17964-RE. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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