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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17970-RA through 18771 annotations produced 1 hits



Cyp4ac2 (Cyp4ac2):

Annotation Number : CG17970
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031694
Gbrowse : chr2L:5266431-5268322 (+) // 100.0 //
Probeset : 1623866_at
Accessions : protein= NP_608917;, nucleotide= NM_135073;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0031694.
Homophila reports that CG17970 is a close match (6e-11) to human gene CYP11B1;FHI;P450C11 (NP_000488), a gene associated with Adrenal hyperplasia, congenital, due to 11-beta-hydroxylase deficiency, 202010 (3);Aldosteronism, glucocorticoid-remediable, 103900 (3).
VDRC has 3 RNAi stocks for FBgn0031694 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head57 ± 74 of 4 3.10Up
Eye25 ± 43 of 4 1.39None
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland3 ± 10 of 4 0.17Down
Crop0 ± 00 of 4 0.00Down
Midgut16 ± 00 of 4 0.90None
Tubule0 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.10Down
Heart52 ± 104 of 4 2.81Up
Fat body53 ± 94 of 4 2.87Up
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands34 ± 24 of 4 1.90Up
Virgin spermatheca19 ± 33 of 4 1.05None
Mated spermatheca18 ± 32 of 4 1.01None
Adult carcass185 ± 144 of 410.00Up
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.08Down
Larval midgut2 ± 10 of 4 0.11Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.11Down
Larval fat body6 ± 20 of 4 0.40None
Larval trachea0 ± 00 of 4 0.02Down
Larval carcass0 ± 00 of 4 0.03Down
S2 cells (growing)132 ± 84 of 4 7.12Up
Whole fly18 ± 43 of 4

Looking for CG17970-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime