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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17975-RA through 18771 annotations produced 1 hits



sugar transporter 2 (sut2):

Annotation Number : CG17975
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028562
Gbrowse : chr2R:3974920-3976802 (+) // 100.0 //
Probeset : 1625307_at
Accessions : protein= NP_524732;, nucleotide= NM_079993;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005351 // sugar:hydrogen symporter activity
FlyMine data for FBgn0028562.
Homophila reports that CG17975 is a close match (5e-50) to human gene GLUT9;SLC2A9;UAQTL2 (NP_001001290), a gene associated with {Uric acid concentration, serum, QTL 2}, 612076 (3).
BioGrid reports that CG17975 interacts with CG3099 .
VDRC has 3 RNAi stocks for FBgn0028562 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 12 of 4 0.50Down
Head11 ± 24 of 4 0.70None
Eye16 ± 24 of 4 0.89None
Thoracicoabdominal ganglion9 ± 12 of 4 0.50None
Salivary gland100 ± 94 of 4 5.48Up
Crop10 ± 10 of 4 0.60None
Midgut215 ± 14 of 411.80Up
Tubule13 ± 11 of 4 0.70Down
Hindgut50 ± 14 of 4 2.70Up
Heart2 ± 00 of 4 0.11Down
Fat body7 ± 20 of 4 0.43None
Ovary5 ± 12 of 4 0.30Down
Testis3 ± 11 of 4 0.20Down
Male accessory glands14 ± 31 of 4 0.80None
Virgin spermatheca12 ± 23 of 4 0.68None
Mated spermatheca14 ± 22 of 4 0.80None
Adult carcass10 ± 30 of 4 0.60None
Larval CNS5 ± 21 of 4 0.33Down
Larval Salivary gland3 ± 10 of 4 0.19Down
Larval midgut71 ± 54 of 4 3.91Up
Larval tubule7 ± 11 of 4 0.40Down
Larval hindgut10 ± 22 of 4 0.57None
Larval fat body18 ± 30 of 4 1.00None
Larval trachea2 ± 10 of 4 0.16Down
Larval carcass11 ± 22 of 4 0.61None
S2 cells (growing)5 ± 02 of 4 0.30Down
Whole fly18 ± 34 of 4

Looking for CG17975-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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