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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18001-RA through 18771 annotations produced 1 hits



"Enhancer on chromosome 2 ( complementation group b"):

Annotation Number : CG18001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr2R:403501-403961 (-) // 100.0 //
Probeset : 1629984_s_at
Accessions : protein= , nucleotide= NP_001036440;
Pathway : 0006412 // translation // inferred from sequence or structural similarity /// 0006412 // translation // inferred from el
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
FlyMine data for full length.
BioGrid reports that CG18001 interacts with CG4394 CG4697 CG4810 CG3924 CG3936 CG3936 CG11387 CG8118 CG3830 CG1849 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3228 854 of 4 0.80None
Head4684 2224 of 4 1.20None
Eye6719 614 of 4 1.66Up
Thoracicoabdominal ganglion4732 1234 of 4 1.20None
Salivary gland9524 5124 of 4 2.36Up
Crop6387 3854 of 4 1.60Up
Midgut5853 744 of 4 1.40Up
Tubule6982 1474 of 4 1.70Up
Hindgut5325 964 of 4 1.30Up
Heart6518 3534 of 4 1.61Up
Fat body6481 7034 of 4 1.60Up
Ovary3613 904 of 4 0.90None
Testis1183 374 of 4 0.30Down
Male accessory glands9824 1484 of 4 2.40Up
Virgin spermatheca6488 2774 of 4 1.61Up
Mated spermatheca6962 1864 of 4 1.72Up
Adult carcass5731 3084 of 4 1.40Up
Larval CNS3110 1704 of 4 0.77Down
Larval Salivary gland8438 3664 of 4 2.09Up
Larval midgut5609 1544 of 4 1.39Up
Larval tubule5752 844 of 4 1.40Up
Larval hindgut5070 894 of 4 1.25Up
Larval fat body7701 9174 of 4 1.90Up
Larval trachea6143 1134 of 4 1.52Up
Larval carcass5441 3544 of 4 1.35Up
S2 cells (growing)4832 804 of 4 1.20Up
Whole fly4041 2324 of 4

Looking for CG18001-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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