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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18004-RC through 18771 annotations produced 2 hits



(CG18004):

Annotation Number : CG18004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033566
Gbrowse : chr2R:6772523-6773880 (+) // 100.0 //
Probeset : 1631640_a_at
Accessions : protein= NP_610625; /// NP_724985; /// NP_724986;, nucleotide= NM_136781; /// NM_165807; /// NM_165808;
FlyMine data for FBgn0033566.
BDGP gene expression has embryonic in situ data for CG18004: 4 pix of staining in 1 body parts.
BioGrid reports that CG18004 interacts with CG31111 CG3342 CG5352 CG9326 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 ± 44 of 4 0.90None
Head65 ± 34 of 4 0.50Down
Eye65 ± 24 of 4 0.46Down
Thoracicoabdominal ganglion97 ± 34 of 4 0.70Down
Salivary gland59 ± 43 of 4 0.43Down
Crop77 ± 34 of 4 0.60Down
Midgut45 ± 30 of 4 0.30Down
Tubule70 ± 44 of 4 0.50Down
Hindgut58 ± 53 of 4 0.40Down
Heart64 ± 24 of 4 0.45Down
Fat body51 ± 31 of 4 0.37Down
Ovary277 ± 54 of 4 2.00Up
Testis81 ± 34 of 4 0.60Down
Male accessory glands112 ± 83 of 4 0.80Down
Virgin spermatheca42 ± 23 of 4 0.30Down
Mated spermatheca52 ± 44 of 4 0.37Down
Adult carcass57 ± 12 of 4 0.40Down
Larval CNS169 ± 144 of 4 1.20Up
Larval Salivary gland115 ± 44 of 4 0.82Down
Larval midgut35 ± 40 of 4 0.25Down
Larval tubule91 ± 34 of 4 0.70Down
Larval hindgut68 ± 33 of 4 0.49Down
Larval fat body68 ± 41 of 4 0.50Down
Larval trachea131 ± 54 of 4 0.93None
Larval carcass69 ± 53 of 4 0.49Down
S2 cells (growing)105 ± 34 of 4 0.75Down
Whole fly140 ± 74 of 4



(CG18004):

Annotation Number : CG18004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033566
Gbrowse : chr2R:6772828-6773880 (+) // 100.0 //
Probeset : 1626095_at
Accessions : protein= NP_610625; /// NP_724985; /// NP_724986;, nucleotide= NM_136781; /// NM_165807; /// NM_165808;
FlyMine data for FBgn0033566.
BDGP gene expression has embryonic in situ data for CG18004: 4 pix of staining in 1 body parts.
BioGrid reports that CG18004 interacts with CG31111 CG3342 CG5352 CG9326 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 02 of 4 1.40None
Head3 ± 00 of 4 0.60None
Eye2 ± 00 of 4 0.41None
Thoracicoabdominal ganglion3 ± 00 of 4 0.70None
Salivary gland9 ± 10 of 4 1.92Up
Crop4 ± 21 of 4 1.00None
Midgut2 ± 00 of 4 0.50None
Tubule4 ± 10 of 4 0.90None
Hindgut6 ± 20 of 4 1.30None
Heart5 ± 00 of 4 1.19None
Fat body8 ± 71 of 4 1.68None
Ovary2 ± 00 of 4 0.50None
Testis0 ± 00 of 4 0.10Down
Male accessory glands12 ± 33 of 4 2.60None
Virgin spermatheca6 ± 01 of 4 1.35None
Mated spermatheca6 ± 21 of 4 1.26None
Adult carcass2 ± 00 of 4 0.60None
Larval CNS8 ± 13 of 4 1.82Up
Larval Salivary gland3 ± 10 of 4 0.77None
Larval midgut2 ± 00 of 4 0.42None
Larval tubule2 ± 10 of 4 0.50None
Larval hindgut4 ± 00 of 4 0.97None
Larval fat body4 ± 10 of 4 0.90None
Larval trachea5 ± 30 of 4 1.14None
Larval carcass3 ± 10 of 4 0.68None
S2 cells (growing)2 ± 10 of 4 0.54None
Whole fly4 ± 10 of 4

Looking for CG18004-RC. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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