Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1801-RA through 18771 annotations produced 1 hits



(CG1801):

Annotation Number : CG1801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031171
Gbrowse : chrX:21178612-21186082 (-) // 100.0 //
Probeset : 1629825_a_at
Accessions : protein= NP_728408;, nucleotide= NM_167739;
Pathway : 0043190 // ATP-binding cassette (ABC) transporter complex // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0031171.
Homophila reports that CG1801 is a close match (2e-13) to human gene ABCG5 (NP_071881), a gene associated with Sitosterolemia, 210250 (3).
VDRC has 2 RNAi stocks for FBgn0031171 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.11Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.30Down
Salivary gland8 ± 40 of 4 0.50None
Crop3 ± 00 of 4 0.20Down
Midgut3 ± 10 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.20Down
Heart1 ± 00 of 4 0.11Down
Fat body6 ± 30 of 4 0.37Down
Ovary3 ± 00 of 4 0.20Down
Testis286 ± 74 of 417.00Up
Male accessory glands5 ± 21 of 4 0.30Down
Virgin spermatheca1 ± 00 of 4 0.07Down
Mated spermatheca2 ± 10 of 4 0.12Down
Adult carcass5 ± 10 of 4 0.40Down
Larval CNS1 ± 00 of 4 0.10Down
Larval Salivary gland4 ± 20 of 4 0.27Down
Larval midgut2 ± 00 of 4 0.14Down
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut0 ± 00 of 4 0.05Down
Larval fat body30 ± 153 of 4 1.80None
Larval trachea2 ± 21 of 4 0.13Down
Larval carcass5 ± 00 of 4 0.32Down
S2 cells (growing)3 ± 00 of 4 0.19Down
Whole fly16 ± 24 of 4

Looking for CG1801-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime