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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18031-RA through 18771 annotations produced 1 hits



(CG18031):

Annotation Number : CG18031
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023550
Gbrowse : chrX:2095851-2097837 (-) // 100.0 //
Probeset : 1637291_at
Accessions : protein= NP_652021;, nucleotide= NM_143764;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0023550.
BDGP gene expression has embryonic in situ data for EG:103B4.2: 13 pix of staining in 2 body parts.
BioGrid reports that CG18031 interacts with CG32016 .
VDRC has 3 RNAi stocks for FBgn0023550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye14 ± 13 of 4 0.25Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.04Down
Crop15 ± 13 of 4 0.30Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.10Down
Hindgut6 ± 10 of 4 0.10Down
Heart649 ± 534 of 410.96Up
Fat body711 ± 644 of 412.00Up
Ovary3 ± 00 of 4 0.10Down
Testis3 ± 00 of 4 0.10Down
Male accessory glands8 ± 31 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.04Down
Mated spermatheca3 ± 10 of 4 0.05Down
Adult carcass520 ± 214 of 4 8.80Up
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut2 ± 00 of 4 0.04Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut9 ± 22 of 4 0.16Down
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea7 ± 101 of 4 0.12Down
Larval carcass501 ± 154 of 4 8.47Up
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly59 ± 34 of 4

Looking for CG18031-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime