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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1804-RA through 18771 annotations produced 1 hits



kekkon-like (kek6):

Annotation Number : CG1804
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039862
Gbrowse : chr3R:27484639-27487331 (+) // 100.0 //
Probeset : 1639987_at
Accessions : protein= NP_651880;, nucleotide= NM_143623;
FlyMine data for FBgn0039862.
VDRC has 6 RNAi stocks for FBgn0039862 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 10 of 4 5.50None
Head4 ± 10 of 4 2.60None
Eye7 ± 10 of 4 4.51Up
Thoracicoabdominal ganglion3 ± 10 of 4 2.10None
Salivary gland3 ± 10 of 4 2.13None
Crop3 ± 00 of 4 2.00None
Midgut6 ± 20 of 4 3.80None
Tubule3 ± 10 of 4 2.10None
Hindgut2 ± 00 of 4 1.60None
Heart2 ± 00 of 4 1.31None
Fat body3 ± 20 of 4 1.97None
Ovary2 ± 00 of 4 1.30None
Testis2 ± 10 of 4 1.40None
Male accessory glands4 ± 10 of 4 2.50None
Virgin spermatheca5 ± 10 of 4 3.18None
Mated spermatheca8 ± 00 of 4 5.16Up
Adult carcass1 ± 00 of 4 0.90None
Larval CNS1 ± 10 of 4 1.18None
Larval Salivary gland4 ± 20 of 4 2.39None
Larval midgut3 ± 00 of 4 2.01Up
Larval tubule1 ± 00 of 4 0.80None
Larval hindgut1 ± 00 of 4 1.04None
Larval fat body6 ± 20 of 4 3.80None
Larval trachea3 ± 20 of 4 1.94None
Larval carcass2 ± 00 of 4 1.25None
S2 cells (growing)4 ± 10 of 4 2.39None
Whole fly1 ± 00 of 4

Looking for CG1804-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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