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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18041-RA through 18771 annotations produced 1 hits



dim gamma-tubulin 1 (dgt1):

Annotation Number : CG18041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039710
Gbrowse : chr3R:25680416-25683191 (-) // 99.71 //
Probeset : 1627141_at
Accessions : protein= NP_651737;, nucleotide= NM_143480;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004427 // inorganic diphosphatase activity
FlyMine data for FBgn0039710.
BDGP gene expression has embryonic in situ data for CG18041: 8 pix of staining in 1 body parts.
BioGrid reports that CG18041 interacts with CG5121 .
VDRC has 3 RNAi stocks for FBgn0039710 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain115 34 of 4 0.80None
Head85 54 of 4 0.60Down
Eye73 24 of 4 0.53Down
Thoracicoabdominal ganglion88 34 of 4 0.60Down
Salivary gland115 104 of 4 0.83None
Crop71 74 of 4 0.50Down
Midgut55 64 of 4 0.40Down
Tubule67 24 of 4 0.50Down
Hindgut75 64 of 4 0.50Down
Heart81 54 of 4 0.58Down
Fat body67 94 of 4 0.48Down
Ovary269 34 of 4 1.90Up
Testis85 24 of 4 0.60Down
Male accessory glands84 44 of 4 0.60Down
Virgin spermatheca79 64 of 4 0.57Down
Mated spermatheca78 84 of 4 0.56Down
Adult carcass69 34 of 4 0.50Down
Larval CNS195 124 of 4 1.40Up
Larval Salivary gland94 74 of 4 0.68Down
Larval midgut36 34 of 4 0.26Down
Larval tubule80 54 of 4 0.60Down
Larval hindgut79 24 of 4 0.57Down
Larval fat body72 34 of 4 0.50Down
Larval trachea85 104 of 4 0.61Down
Larval carcass54 54 of 4 0.39Down
S2 cells (growing)170 34 of 4 1.22Up
Whole fly139 84 of 4

Looking for CG18041-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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