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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18048-RA through 18771 annotations produced 1 hits



(CG18048):

Annotation Number : CG18048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037435
Gbrowse : chr3R:2171837-2173240 (+) // 100.0 //
Probeset : 1623560_at
Accessions : protein= NP_649646;, nucleotide= NM_141389;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation
FlyMine data for FBgn0037435.
BDGP gene expression has embryonic in situ data for CG18048: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037435 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 14 of 4 1.00None
Head20 24 of 4 0.50Down
Eye27 34 of 4 0.62Down
Thoracicoabdominal ganglion36 14 of 4 0.80None
Salivary gland36 44 of 4 0.81None
Crop18 24 of 4 0.40Down
Midgut16 14 of 4 0.40Down
Tubule18 13 of 4 0.40Down
Hindgut28 14 of 4 0.60Down
Heart13 24 of 4 0.31Down
Fat body9 20 of 4 0.21Down
Ovary95 44 of 4 2.20Up
Testis8 02 of 4 0.20Down
Male accessory glands37 24 of 4 0.90None
Virgin spermatheca14 04 of 4 0.33Down
Mated spermatheca16 14 of 4 0.36Down
Adult carcass14 10 of 4 0.30Down
Larval CNS45 24 of 4 1.04None
Larval Salivary gland32 24 of 4 0.74Down
Larval midgut14 22 of 4 0.34Down
Larval tubule16 03 of 4 0.40Down
Larval hindgut33 34 of 4 0.75Down
Larval fat body5 10 of 4 0.10Down
Larval trachea40 44 of 4 0.91None
Larval carcass17 10 of 4 0.39Down
S2 cells (growing)29 14 of 4 0.68Down
Whole fly44 24 of 4

Looking for CG18048-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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