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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18067-RA through 18771 annotations produced 1 hits



(CG18067):

Annotation Number : CG18067
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034512
Gbrowse : chr2R:16422014-16422860 (+) // 100.0 //
Probeset : 1640144_at
Accessions : protein= NP_611484;, nucleotide= NM_137640;
Interpro : "0004114 // 3'
FlyMine data for FBgn0034512.
BioGrid reports that CG18067 interacts with CG9875 CG3003 CG5440 .
VDRC has 1 RNAi stocks for FBgn0034512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain376 ± 94 of 4 0.30Down
Head3292 ± 1074 of 4 2.90Up
Eye3196 ± 4744 of 4 2.81Up
Thoracicoabdominal ganglion1525 ± 74 of 4 1.30Up
Salivary gland2335 ± 454 of 4 2.05Up
Crop1098 ± 474 of 4 1.00None
Midgut68 ± 34 of 4 0.10Down
Tubule478 ± 1954 of 4 0.40Down
Hindgut1546 ± 624 of 4 1.40Up
Heart3454 ± 5384 of 4 3.04Up
Fat body3990 ± 4374 of 4 3.51Up
Ovary7 ± 02 of 4 0.00Down
Testis58 ± 34 of 4 0.10Down
Male accessory glands3490 ± 1534 of 4 3.10Up
Virgin spermatheca5356 ± 2264 of 4 4.71Up
Mated spermatheca5241 ± 1194 of 4 4.61Up
Adult carcass4301 ± 2794 of 4 3.80Up
Larval CNS64 ± 354 of 4 0.06Down
Larval Salivary gland117 ± 204 of 4 0.10Down
Larval midgut25 ± 43 of 4 0.02Down
Larval tubule203 ± 244 of 4 0.20Down
Larval hindgut241 ± 214 of 4 0.21Down
Larval fat body3538 ± 1884 of 4 3.10Up
Larval trachea841 ± 2144 of 4 0.74None
Larval carcass377 ± 344 of 4 0.33Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly1136 ± 1094 of 4

Looking for CG18067-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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