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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG18085-RA through 18771 annotations produced 1 hits


sevenless (sev):

Annotation Number : CG18085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003366
Gbrowse : chrX:10965473-10980332 (-) // 100.0 //
Probeset : 1637717_at
Accessions : protein= NP_511114;, nucleotide= NM_078559;
Pathway : embryo // traceable author statement /// 0045464 // R8 cell fate specification // inferred from mutant phenotype /// 00
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
FlyMine data for FBgn0003366.
BDGP gene expression has embryonic in situ data for sev: 4 pix of staining in 1 body parts.
Homophila reports that CG18085 is a close match (5e-11) to human gene ANKK1 (NP_848605), a gene associated with Dopamine receptor D2, reduced brain density of (3).
BioGrid reports that CG18085 interacts with CG1921 CG5942 CG6871 CG9695 CG9695 CG3619 CG4059 CG2275 CG2275 CG3696 CG8491 CG8118 CG18740 CG7467 CG17077 CG9375 CG12559 CG12559 CG3180 CG4385 CG3469 CG5529 CG12019 CG15793 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG6721 CG18402 CG9375 CG3284 CG7471 CG8553 CG7873 CG17603 CG5444 CG32211 CG5163 CG5163 CG7508 CG32134 CG6556 CG6033 CG6033 CG6033 CG6033 CG5605 CG4063 CG7693 CG3874 CG2899 CG33106 CG10108 CG10108 CG9412 CG12559 CG9936 CG4200 CG7847 CG1921 CG1921 CG11502 CG8651 CG1856 CG6235 CG32217 CG1044 CG1044 CG1044 CG1044 CG1044 CG1044 CG1044 CG1044 CG1044 CG1044 CG33261 Dmel CG33956 CG8285 CG3954 CG9695 CG9695 .
TRiP has 3 RNAi stocks for FBgn0003366 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003366 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 ± 24 of 4 2.20Up
Head74 ± 24 of 4 2.00Up
Eye28 ± 21 of 4 0.77Down
Thoracicoabdominal ganglion112 ± 54 of 4 3.00Up
Salivary gland3 ± 00 of 4 0.09Down
Crop119 ± 114 of 4 3.20Up
Midgut4 ± 10 of 4 0.10Down
Tubule4 ± 10 of 4 0.10Down
Hindgut23 ± 00 of 4 0.60Down
Heart118 ± 94 of 4 3.21Up
Fat body162 ± 194 of 4 4.39Up
Ovary3 ± 00 of 4 0.10Down
Testis19 ± 00 of 4 0.50Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca18 ± 10 of 4 0.49Down
Mated spermatheca18 ± 10 of 4 0.50Down
Adult carcass126 ± 84 of 4 3.40Up
Larval CNS73 ± 73 of 4 2.00Up
Larval Salivary gland0 ± 00 of 4 0.02Down
Larval midgut2 ± 10 of 4 0.06Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.06Down
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea6 ± 40 of 4 0.17Down
Larval carcass138 ± 193 of 4 3.75Up
S2 cells (growing)1 ± 10 of 4 0.05Down
Whole fly36 ± 10 of 4

Looking for CG18085-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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