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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG18095-RA through 18771 annotations produced 1 hits

gp150-like (CG18095):

Annotation Number : CG18095
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028872
Gbrowse : chr2L:14029645-14031534 (-) // 100.0 //
Probeset : 1631274_at
Accessions : protein= NP_609697;, nucleotide= NM_135853;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0028872.
Homophila reports that CG18095 is a close match (5e-11) to human gene ASPN;PLAP1 (NP_060150), a gene associated with {Lumbar disc degeneration}, 603932 (3);{Osteoarthritis, susceptibility to}, 165720 (3).
BioGrid reports that CG18095 interacts with CG2262 .
TRiP has 1 RNAi stocks for FBgn0028872 available for purchase.
VDRC has 11 RNAi stocks for FBgn0028872 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 03 of 4 0.40None
Head3 10 of 4 0.20Down
Eye1 00 of 4 0.09Down
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland12 30 of 4 0.86None
Crop1 00 of 4 0.10Down
Midgut3 10 of 4 0.30Down
Tubule980 2124 of 467.50Up
Hindgut1 00 of 4 0.10Down
Heart2 00 of 4 0.17Down
Fat body8 61 of 4 0.60None
Ovary1 00 of 4 0.10Down
Testis3 10 of 4 0.20Down
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca6 11 of 4 0.42None
Mated spermatheca5 00 of 4 0.34None
Adult carcass7 30 of 4 0.50None
Larval CNS1 00 of 4 0.07Down
Larval Salivary gland1 00 of 4 0.12Down
Larval midgut2 10 of 4 0.19Down
Larval tubule1451 254 of 499.90Up
Larval hindgut5 00 of 4 0.41None
Larval fat body4 10 of 4 0.30Down
Larval trachea1 10 of 4 0.08Down
Larval carcass5 10 of 4 0.36None
S2 cells (growing)2 10 of 4 0.15Down
Whole fly14 33 of 4

Looking for CG18095-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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