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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1810-RA through 18771 annotations produced 1 hits



mRNA-capping-enzyme (mRNA-capping-enzyme):

Annotation Number : CG1810
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030556
Gbrowse : chrX:14134298-14136852 (-) // 100.0 //
Probeset : 1627209_at
Accessions : protein= NP_572952;, nucleotide= NM_132724;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0004484 // mRNA guanylyltransferase activity // inferred from sequence or structural similarity /// 0004484 // mRNA guan
FlyMine data for FBgn0030556.
BDGP gene expression has embryonic in situ data for mRNA-capping-enzyme: 8 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0030556 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030556 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain340 ± 84 of 4 2.10Up
Head234 ± 144 of 4 1.40Up
Eye405 ± 124 of 4 2.49Up
Thoracicoabdominal ganglion297 ± 114 of 4 1.80Up
Salivary gland398 ± 44 of 4 2.45Up
Crop219 ± 44 of 4 1.40Up
Midgut125 ± 34 of 4 0.80Down
Tubule200 ± 84 of 4 1.20Up
Hindgut177 ± 64 of 4 1.10None
Heart131 ± 54 of 4 0.81Down
Fat body170 ± 114 of 4 1.05None
Ovary190 ± 44 of 4 1.20Up
Testis266 ± 134 of 4 1.60Up
Male accessory glands325 ± 114 of 4 2.00Up
Virgin spermatheca144 ± 34 of 4 0.89None
Mated spermatheca157 ± 54 of 4 0.97None
Adult carcass207 ± 114 of 4 1.30Up
Larval CNS337 ± 84 of 4 2.08Up
Larval Salivary gland602 ± 204 of 4 3.71Up
Larval midgut195 ± 104 of 4 1.20Up
Larval tubule161 ± 54 of 4 1.00None
Larval hindgut226 ± 44 of 4 1.39Up
Larval fat body182 ± 74 of 4 1.10None
Larval trachea249 ± 114 of 4 1.54Up
Larval carcass280 ± 44 of 4 1.72Up
S2 cells (growing)316 ± 74 of 4 1.95Up
Whole fly162 ± 84 of 4

Looking for CG1810-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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