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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18106-RA through 18771 annotations produced 1 hits



Immune induced molecule 2 (IM2):

Annotation Number : CG18106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025583
Gbrowse : chr2R:14274101-14274540 (+) // 100.0 //
Probeset : 1640360_at
Accessions : protein= NP_725776;, nucleotide= NM_166277;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // non-traceable autho
FlyMine data for FBgn0025583.
TRiP has 1 RNAi stocks for FBgn0025583 available for purchase.
VDRC has 4 RNAi stocks for FBgn0025583 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 ± 34 of 4 0.10Down
Head2813 ± 764 of 4 3.50Up
Eye1505 ± 3934 of 4 1.85None
Thoracicoabdominal ganglion69 ± 104 of 4 0.10Down
Salivary gland27 ± 33 of 4 0.03Down
Crop61 ± 74 of 4 0.10Down
Midgut6 ± 22 of 4 0.00Down
Tubule129 ± 594 of 4 0.20Down
Hindgut151 ± 184 of 4 0.20Down
Heart1721 ± 2144 of 4 2.11Up
Fat body4156 ± 5714 of 4 5.10Up
Ovary1 ± 01 of 4 0.00Down
Testis6 ± 12 of 4 0.00Down
Male accessory glands8 ± 22 of 4 0.00Down
Virgin spermatheca4245 ± 2044 of 4 5.21Up
Mated spermatheca2697 ± 5064 of 4 3.31Up
Adult carcass2596 ± 1884 of 4 3.20Up
Larval CNS6 ± 33 of 4 0.01Down
Larval Salivary gland13 ± 33 of 4 0.02Down
Larval midgut18 ± 44 of 4 0.02Down
Larval tubule4 ± 01 of 4 0.00Down
Larval hindgut14 ± 04 of 4 0.02Down
Larval fat body305 ± 2584 of 4 0.40None
Larval trachea16 ± 202 of 4 0.02Down
Larval carcass32 ± 104 of 4 0.04Down
S2 cells (growing)3 ± 01 of 4 0.00Down
Whole fly814 ± 1604 of 4

Looking for CG18106-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime