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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18131-RE through 18771 annotations produced 1 hits



(CG18131):

Annotation Number : CG18131
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031343
Gbrowse : chr2L:1498448-1500760 (-) // 100.0 //
Probeset : 1640111_s_at
Accessions : protein= NP_608601; /// NP_722708; /// NP_722709; /// NP_722710; /// NP_722711; /// NP_722712;, nucleotide= NM_134757; /// NM_164421; /// NM_164422; /// NM_164423; /// NM_164424; /// NM_164425;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031343.
BioGrid reports that CG18131 interacts with CG2053 CG6156 CG8614 .
VDRC has 2 RNAi stocks for FBgn0031343 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head4 10 of 4 0.10Down
Eye2 00 of 4 0.04Down
Thoracicoabdominal ganglion5 20 of 4 0.10Down
Salivary gland6 30 of 4 0.10Down
Crop3 00 of 4 0.10Down
Midgut4 20 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut3 00 of 4 0.00Down
Heart2 10 of 4 0.04Down
Fat body6 31 of 4 0.10Down
Ovary5 01 of 4 0.10Down
Testis862 164 of 412.80Up
Male accessory glands6 02 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.05Down
Mated spermatheca4 10 of 4 0.06Down
Adult carcass5 10 of 4 0.10Down
Larval CNS3 10 of 4 0.04Down
Larval Salivary gland3 00 of 4 0.05Down
Larval midgut2 00 of 4 0.04Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut12 33 of 4 0.18Down
Larval fat body112 484 of 4 1.70None
Larval trachea4 33 of 4 0.07Down
Larval carcass4 00 of 4 0.06Down
S2 cells (growing)8 03 of 4 0.13Down
Whole fly67 54 of 4

Looking for CG18131-RE. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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