FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG18135-RB through 18771 annotations produced 1 hits

(CG18135):

Annotation Number : CG18135
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036837
Gbrowse : chr3L:18983125-18991383 (-) // 99.87 //
Probeset : 1626749_a_at
Accessions : protein= NP_649082; /// NP_788524; /// NP_788525; /// NP_788526;, nucleotide= NM_140825; /// NM_176346; /// NM_176347; /// NM_176348;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // inferred
FlyMine data for FBgn0036837.
BDGP gene expression has embryonic in situ data for CG18135: 27 pix of staining in 3 body parts.
BioGrid reports that CG18135 interacts with CG8292 CG5064 CG5920 CG7285 CG33103 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	679 ± 29	4 of 4	0.90	None
Head	950 ± 56	4 of 4	1.30	None
Eye	335 ± 29	4 of 4	0.47	Down
Thoracicoabdominal ganglion	963 ± 100	4 of 4	1.30	None
Salivary gland	56 ± 8	4 of 4	0.08	Down
Crop	441 ± 38	4 of 4	0.60	None
Midgut	1251 ± 63	4 of 4	1.70	Up
Tubule	554 ± 47	4 of 4	0.80	Down
Hindgut	400 ± 16	4 of 4	0.60	Down
Heart	648 ± 53	4 of 4	0.90	None
Fat body	2564 ± 153	4 of 4	3.57	Up
Ovary	480 ± 13	4 of 4	0.70	None
Testis	68 ± 3	4 of 4	0.10	Down
Male accessory glands	32 ± 1	4 of 4	0.00	Down
Virgin spermatheca	3944 ± 260	4 of 4	5.49	Up
Mated spermatheca	2667 ± 264	4 of 4	3.71	Up
Adult carcass	1935 ± 179	4 of 4	2.70	Up
Larval CNS	355 ± 10	4 of 4	0.50	Down
Larval Salivary gland	402 ± 46	4 of 4	0.56	Down
Larval midgut	1590 ± 159	4 of 4	2.22	Up
Larval tubule	434 ± 46	4 of 4	0.60	Down
Larval hindgut	431 ± 34	4 of 4	0.60	Down
Larval fat body	2377 ± 175	4 of 4	3.30	Up
Larval trachea	48 ± 2	4 of 4	0.07	Down
Larval carcass	255 ± 14	4 of 4	0.36	Down
S2 cells (growing)	192 ± 9	4 of 4	0.27	Down
Whole fly	717 ± 92	4 of 4

Looking for CG18135-RB. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720