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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18145-RA through 18771 annotations produced 1 hits



RPA-interacting protein alpha (Ripalpha):

Annotation Number : CG18145
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032189
Gbrowse : chr2L:10199395-10200972 (-) // 100.0 //
Probeset : 1623906_at
Accessions : protein= NP_609351;, nucleotide= NM_135507;
Interpro : 0008270 // zinc ion binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electron
FlyMine data for FBgn0032189.
BDGP gene expression has embryonic in situ data for CG18145: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0032189 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 04 of 4 0.70Down
Head55 ± 34 of 4 0.40Down
Eye47 ± 14 of 4 0.38Down
Thoracicoabdominal ganglion99 ± 44 of 4 0.80Down
Salivary gland21 ± 30 of 4 0.17Down
Crop50 ± 24 of 4 0.40Down
Midgut40 ± 14 of 4 0.30Down
Tubule38 ± 34 of 4 0.30Down
Hindgut38 ± 14 of 4 0.30Down
Heart31 ± 14 of 4 0.25Down
Fat body36 ± 44 of 4 0.30Down
Ovary274 ± 94 of 4 2.20Up
Testis105 ± 54 of 4 0.80Down
Male accessory glands20 ± 10 of 4 0.20Down
Virgin spermatheca42 ± 14 of 4 0.34Down
Mated spermatheca26 ± 14 of 4 0.21Down
Adult carcass53 ± 44 of 4 0.40Down
Larval CNS79 ± 34 of 4 0.64Down
Larval Salivary gland18 ± 30 of 4 0.14Down
Larval midgut35 ± 24 of 4 0.28Down
Larval tubule44 ± 24 of 4 0.40Down
Larval hindgut25 ± 14 of 4 0.21Down
Larval fat body79 ± 104 of 4 0.60Down
Larval trachea42 ± 54 of 4 0.34Down
Larval carcass36 ± 24 of 4 0.30Down
S2 cells (growing)74 ± 14 of 4 0.59Down
Whole fly124 ± 24 of 4

Looking for CG18145-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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