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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG18146-RA through 18771 annotations produced 1 hits

CG18146 (nimC2):

Annotation Number : CG18146
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028939
Gbrowse : chr2L:13980159-13982640 (+) // 100.0 //
Probeset : 1637659_a_at
Accessions : protein= NP_609695; /// NP_788047;, nucleotide= NM_135851; /// NM_176033;
FlyMine data for FBgn0028939.
Homophila reports that CG18146 is a close match (4e-18) to human gene TNX;TNXB;TNXB1;TNXB2;TNXBS (NP_061978), a gene associated with Ehlers-Danlos due to tenascin X deficiency, 606408 (3);Ehlers-Danlos syndrome, hypermobility type, 130020 (3).
TRiP has 1 RNAi stocks for FBgn0028939 available for purchase.
VDRC has 4 RNAi stocks for FBgn0028939 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 11 of 4 2.60Up
Head15 21 of 4 4.80Up
Eye5 11 of 4 1.79None
Thoracicoabdominal ganglion3 10 of 4 1.00None
Salivary gland8 20 of 4 2.55None
Crop4 20 of 4 1.30None
Midgut1 00 of 4 0.30None
Tubule3 00 of 4 1.00None
Hindgut1 00 of 4 0.50None
Heart66 54 of 421.00Up
Fat body2 10 of 4 0.65None
Ovary2 00 of 4 0.60None
Testis3 00 of 4 1.00None
Male accessory glands2 00 of 4 0.70None
Virgin spermatheca2 10 of 4 0.89None
Mated spermatheca0 00 of 4 0.26None
Adult carcass25 32 of 4 8.10Up
Larval CNS3 00 of 4 1.13None
Larval Salivary gland11 30 of 4 3.46None
Larval midgut1 00 of 4 0.31None
Larval tubule18 53 of 4 5.90None
Larval hindgut13 21 of 4 4.14Up
Larval fat body4178 3934 of 41316.10Up
Larval trachea2 10 of 4 0.65None
Larval carcass8 61 of 4 2.57None
S2 cells (growing)0 00 of 4 0.28None
Whole fly3 10 of 4

Looking for CG18146-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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