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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18157-RA through 18771 annotations produced 2 hits



/// (CG32598 /// CG32601):

Annotation Number : CG32601
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030563 /// FBgn0052598 /// FBgn0052601
Gbrowse : chrX:14272909-14273859 (+) // 100.0 // /// chrX:14210162-14211112 (-) // 99.22 //
Probeset : 1641340_s_at
Accessions : protein= NP_727778; /// NP_727779;, nucleotide= NM_167406; /// NM_167407;
Pathway : DNA-dependent // inferred from sequence or structural similarity"
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity
FlyMine data for FBgn0030563 /// FBgn0052598 /// FBgn0052601.
BioGrid reports that CG32601 interacts with CG8759 CG5009 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland8 ± 31 of 4 0.49None
Crop3 ± 00 of 4 0.20Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.10Down
Hindgut3 ± 00 of 4 0.20Down
Heart2 ± 00 of 4 0.14Down
Fat body8 ± 41 of 4 0.46Down
Ovary2 ± 00 of 4 0.10Down
Testis299 ± 74 of 416.90Up
Male accessory glands7 ± 11 of 4 0.40Down
Virgin spermatheca4 ± 10 of 4 0.26Down
Mated spermatheca6 ± 21 of 4 0.38Down
Adult carcass3 ± 10 of 4 0.20Down
Larval CNS3 ± 11 of 4 0.22Down
Larval Salivary gland2 ± 00 of 4 0.12Down
Larval midgut1 ± 00 of 4 0.07Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.15Down
Larval fat body79 ± 284 of 4 4.50None
Larval trachea2 ± 10 of 4 0.11Down
Larval carcass1 ± 00 of 4 0.11Down
S2 cells (growing)26 ± 14 of 4 1.51Up
Whole fly17 ± 24 of 4



(CG18157):

Annotation Number : CG18157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030563
Gbrowse : chrX:14208851-14209445 (-) // 100.0 //
Probeset : 1629532_at
Accessions : protein= NP_727777;, nucleotide= NM_167405;
FlyMine data for FBgn0030563.
VDRC has 1 RNAi stocks for FBgn0030563 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head2 ± 10 of 4 0.80None
Eye0 ± 00 of 4 0.23None
Thoracicoabdominal ganglion1 ± 00 of 4 0.60None
Salivary gland3 ± 10 of 4 1.20None
Crop3 ± 10 of 4 1.20None
Midgut0 ± 00 of 4 0.30None
Tubule2 ± 10 of 4 0.80None
Hindgut1 ± 00 of 4 0.50None
Heart2 ± 00 of 4 0.70None
Fat body1 ± 00 of 4 0.40None
Ovary1 ± 00 of 4 0.40None
Testis32 ± 14 of 411.50Up
Male accessory glands3 ± 20 of 4 1.30None
Virgin spermatheca1 ± 00 of 4 0.34None
Mated spermatheca0 ± 00 of 4 0.22None
Adult carcass3 ± 20 of 4 1.10None
Larval CNS1 ± 10 of 4 0.56None
Larval Salivary gland1 ± 00 of 4 0.38None
Larval midgut1 ± 00 of 4 0.39None
Larval tubule1 ± 00 of 4 0.70None
Larval hindgut0 ± 00 of 4 0.31None
Larval fat body10 ± 11 of 4 3.70Up
Larval trachea1 ± 10 of 4 0.59None
Larval carcass1 ± 00 of 4 0.42None
S2 cells (growing)0 ± 00 of 4 0.19None
Whole fly2 ± 00 of 4

Looking for CG18157-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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