FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1817-RB through 18771 annotations produced 2 hits

Protein tyrosine phosphatase 10D (Ptp10D):

Annotation Number : CG1817
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004370
Gbrowse : chrX:11517979-11567520 (+) // 100.0 //
Probeset : 1634653_a_at
Accessions : protein= NP_001138187; /// NP_727544; /// NP_996413; /// NP_996414;, nucleotide= NM_001144715; /// NM_167292; /// NM_206690; /// NM_206691;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // non-trac
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase a
FlyMine data for FBgn0004370.
Homophila reports that CG1817 is a close match (9e-11) to human gene CAPB;DRT;EPHB2;EPHT3;ERK;PCBC (NP_059145), a gene associated with Prostate cancer, progression and metastasis of, 603688 (3).
BioGrid reports that CG1817 interacts with CG8355 CG18243 CG10975 CG10975 CG17943 .
TRiP has 1 RNAi stocks for FBgn0004370 available for purchase.
VDRC has 5 RNAi stocks for FBgn0004370 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 1	0 of 4	0.30	Down
Head	14 ± 3	0 of 4	0.70	None
Eye	6 ± 0	0 of 4	0.31	Down
Thoracicoabdominal ganglion	6 ± 3	0 of 4	0.30	Down
Salivary gland	7 ± 4	0 of 4	0.36	Down
Crop	42 ± 2	4 of 4	2.00	Up
Midgut	4 ± 1	0 of 4	0.20	Down
Tubule	7 ± 1	0 of 4	0.30	Down
Hindgut	25 ± 1	1 of 4	1.20	None
Heart	5 ± 1	0 of 4	0.26	Down
Fat body	8 ± 3	0 of 4	0.37	Down
Ovary	29 ± 3	4 of 4	1.40	None
Testis	45 ± 4	4 of 4	2.10	Up
Male accessory glands	6 ± 1	0 of 4	0.30	Down
Virgin spermatheca	4 ± 1	0 of 4	0.20	Down
Mated spermatheca	4 ± 1	0 of 4	0.19	Down
Adult carcass	7 ± 1	0 of 4	0.30	Down
Larval CNS	6 ± 1	0 of 4	0.30	Down
Larval Salivary gland	10 ± 3	0 of 4	0.49	None
Larval midgut	3 ± 0	0 of 4	0.14	Down
Larval tubule	25 ± 2	0 of 4	1.20	None
Larval hindgut	26 ± 3	3 of 4	1.25	None
Larval fat body	7 ± 3	0 of 4	0.30	Down
Larval trachea	34 ± 2	4 of 4	1.62	Up
Larval carcass	25 ± 2	2 of 4	1.20	None
S2 cells (growing)	13 ± 1	0 of 4	0.62	None
Whole fly	21 ± 3	1 of 4

Protein tyrosine phosphatase 10D (Ptp10D):

Annotation Number : CG1817
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004370
Gbrowse : chrX:11516060-11570286 (+) // 100.0 //
Probeset : 1624660_at
Accessions : protein= NP_001138187; /// NP_727544; /// NP_996413; /// NP_996414;, nucleotide= NM_001144715; /// NM_167292; /// NM_206690; /// NM_206691;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // non-trac
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase a
FlyMine data for FBgn0004370.
Homophila reports that CG1817 is a close match (9e-11) to human gene CAPB;DRT;EPHB2;EPHT3;ERK;PCBC (NP_059145), a gene associated with Prostate cancer, progression and metastasis of, 603688 (3).
BioGrid reports that CG1817 interacts with CG8355 CG18243 CG10975 CG10975 CG17943 .
TRiP has 1 RNAi stocks for FBgn0004370 available for purchase.
VDRC has 5 RNAi stocks for FBgn0004370 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	42 ± 1	4 of 4	0.90	None
Head	31 ± 3	4 of 4	0.70	Down
Eye	16 ± 1	4 of 4	0.37	Down
Thoracicoabdominal ganglion	17 ± 1	4 of 4	0.40	Down
Salivary gland	13 ± 0	1 of 4	0.29	Down
Crop	131 ± 5	4 of 4	2.90	Up
Midgut	5 ± 0	0 of 4	0.10	Down
Tubule	14 ± 6	2 of 4	0.30	Down
Hindgut	79 ± 2	4 of 4	1.70	Up
Heart	9 ± 1	4 of 4	0.20	Down
Fat body	20 ± 5	4 of 4	0.45	Down
Ovary	133 ± 5	4 of 4	2.90	Up
Testis	50 ± 1	4 of 4	1.10	None
Male accessory glands	10 ± 2	1 of 4	0.20	Down
Virgin spermatheca	9 ± 1	1 of 4	0.21	Down
Mated spermatheca	11 ± 2	3 of 4	0.24	Down
Adult carcass	21 ± 2	4 of 4	0.50	Down
Larval CNS	56 ± 10	4 of 4	1.22	None
Larval Salivary gland	21 ± 2	4 of 4	0.46	Down
Larval midgut	8 ± 0	1 of 4	0.18	Down
Larval tubule	57 ± 3	4 of 4	1.20	None
Larval hindgut	121 ± 4	4 of 4	2.64	Up
Larval fat body	15 ± 3	4 of 4	0.30	Down
Larval trachea	108 ± 5	4 of 4	2.35	Up
Larval carcass	108 ± 8	4 of 4	2.37	Up
S2 cells (growing)	30 ± 0	4 of 4	0.66	Down
Whole fly	46 ± 3	4 of 4

Looking for CG1817-RB. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720