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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18174-RA through 18771 annotations produced 1 hits



chr2L:5058395-5059816 (-) // 100.0 // (yippee interacting protein 5):

Annotation Number : CG18174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1628531_at
Accessions : protein= , nucleotide= NP_608905;
Pathway : 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from mutant phenotype /// 00
Interpro : "0000502 // proteasome complex // inferred from electronic annotation /// 0005838 // proteasome regulatory particle // i
FlyMine data for full length.
BioGrid reports that CG18174 interacts with CG3416 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain276 ± 64 of 4 0.40Down
Head401 ± 154 of 4 0.50Down
Eye263 ± 54 of 4 0.33Down
Thoracicoabdominal ganglion280 ± 104 of 4 0.40Down
Salivary gland520 ± 124 of 4 0.66Down
Crop521 ± 64 of 4 0.70Down
Midgut672 ± 214 of 4 0.90Down
Tubule642 ± 594 of 4 0.80Down
Hindgut489 ± 64 of 4 0.60Down
Heart1104 ± 404 of 4 1.40Up
Fat body1102 ± 504 of 4 1.40Up
Ovary1163 ± 44 of 4 1.50Up
Testis550 ± 104 of 4 0.70Down
Male accessory glands455 ± 294 of 4 0.60Down
Virgin spermatheca453 ± 134 of 4 0.57Down
Mated spermatheca430 ± 134 of 4 0.55Down
Adult carcass743 ± 364 of 4 0.90None
Larval CNS833 ± 554 of 4 1.06None
Larval Salivary gland1016 ± 494 of 4 1.29Up
Larval midgut1077 ± 1414 of 4 1.37None
Larval tubule1686 ± 304 of 4 2.10Up
Larval hindgut995 ± 694 of 4 1.26None
Larval fat body734 ± 574 of 4 0.90None
Larval trachea854 ± 1094 of 4 1.08None
Larval carcass1775 ± 1914 of 4 2.25Up
S2 cells (growing)920 ± 144 of 4 1.17Up
Whole fly789 ± 344 of 4

Looking for CG18174-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime