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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18178-RA through 18771 annotations produced 1 hits



(CG18178):

Annotation Number : CG18178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036035
Gbrowse : chr3L:9710885-9712241 (-) // 100.0 //
Probeset : 1636192_at
Accessions : protein= NP_648350;, nucleotide= NM_140093;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0036035.
BDGP gene expression has embryonic in situ data for CG18178: 4 pix of staining in 1 body parts.
BioGrid reports that CG18178 interacts with CG8580 .
TRiP has 1 RNAi stocks for FBgn0036035 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036035 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 24 of 4 0.30Down
Head59 34 of 4 0.40Down
Eye58 44 of 4 0.43Down
Thoracicoabdominal ganglion51 34 of 4 0.40Down
Salivary gland57 83 of 4 0.42Down
Crop123 14 of 4 0.90None
Midgut45 44 of 4 0.30Down
Tubule29 33 of 4 0.20Down
Hindgut48 44 of 4 0.40Down
Heart61 14 of 4 0.45Down
Fat body81 94 of 4 0.60Down
Ovary348 124 of 4 2.60Up
Testis210 54 of 4 1.60Up
Male accessory glands94 54 of 4 0.70Down
Virgin spermatheca54 14 of 4 0.40Down
Mated spermatheca85 64 of 4 0.64Down
Adult carcass53 24 of 4 0.40Down
Larval CNS173 94 of 4 1.29Up
Larval Salivary gland89 44 of 4 0.66Down
Larval midgut42 34 of 4 0.32Down
Larval tubule30 24 of 4 0.20Down
Larval hindgut57 64 of 4 0.43Down
Larval fat body59 134 of 4 0.40Down
Larval trachea147 284 of 4 1.09None
Larval carcass99 274 of 4 0.74None
S2 cells (growing)188 64 of 4 1.40Up
Whole fly134 44 of 4

Looking for CG18178-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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