FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG18179-RA through 18771 annotations produced 1 hits

(CG18179):

Annotation Number : CG18179
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036023
Gbrowse : chr3L:9632372-9633246 (+) // 100.0 //
Probeset : 1630598_at
Accessions : protein= NP_648340;, nucleotide= NM_140083;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036023.
BDGP gene expression has embryonic in situ data for CG18179: 4 pix of staining in 1 body parts.
Homophila reports that CG18179 is a close match (7e-11) to human gene MTSP1;ST14 (NP_068813), a gene associated with Ichthyosis with hypotrichosis, 610765 (3).
VDRC has 2 RNAi stocks for FBgn0036023 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.00	None
Head	3 ± 1	0 of 4	0.00	None
Eye	2 ± 0	0 of 4	0.01	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.00	None
Salivary gland	4 ± 1	0 of 4	0.02	None
Crop	2 ± 1	0 of 4	0.00	None
Midgut	3918 ± 342	4 of 4	13.70	Up
Tubule	0 ± 0	0 of 4	0.00	Down
Hindgut	1 ± 0	0 of 4	0.00	None
Heart	1 ± 0	0 of 4	0.01	None
Fat body	1 ± 0	0 of 4	0.01	None
Ovary	0 ± 0	0 of 4	0.00	None
Testis	0 ± 0	0 of 4	0.00	None
Male accessory glands	1 ± 0	0 of 4	0.00	None
Virgin spermatheca	1 ± 0	0 of 4	0.00	None
Mated spermatheca	0 ± 0	0 of 4	0.00	None
Adult carcass	7 ± 4	0 of 4	0.00	None
Larval CNS	0 ± 0	0 of 4	0.00	None
Larval Salivary gland	1 ± 0	0 of 4	0.01	None
Larval midgut	1621 ± 419	4 of 4	5.67	Up
Larval tubule	1 ± 0	0 of 4	0.00	None
Larval hindgut	1 ± 0	0 of 4	0.00	None
Larval fat body	1 ± 0	0 of 4	0.00	None
Larval trachea	13 ± 25	1 of 4	0.05	None
Larval carcass	1 ± 0	0 of 4	0.00	None
S2 cells (growing)	1 ± 0	0 of 4	0.00	None
Whole fly	286 ± 104	4 of 4

Looking for CG18179-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720