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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG18211-RA through 18771 annotations produced 1 hits


betaTrypsin (betaTry):

Annotation Number : CG18211
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010357
Gbrowse : chr2R:7233843-7234641 (+) // 100.0 //
Probeset : 1630320_at
Accessions : protein= NP_524904;, nucleotide= NM_080165;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0010357.
Homophila reports that CG18211 is a close match (9e-11) to human gene BSSP3;MRT1;PRSS12 (NP_003610), a gene associated with Mental retardation, autosomal recessive 1, 249500 (3).
VDRC has 2 RNAi stocks for FBgn0010357 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.00Down
Head109 ± 1041 of 4 0.00Down
Eye53 ± 431 of 4 0.01Down
Thoracicoabdominal ganglion10 ± 21 of 4 0.00Down
Salivary gland34 ± 30 of 4 0.01Down
Crop50 ± 253 of 4 0.00Down
Midgut6246 ± 1164 of 4 1.70Up
Tubule3 ± 00 of 4 0.00Down
Hindgut38 ± 34 of 4 0.00Down
Heart8 ± 20 of 4 0.00Down
Fat body7 ± 40 of 4 0.00Down
Ovary4 ± 10 of 4 0.00Down
Testis29 ± 271 of 4 0.00Down
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 00 of 4 0.00Down
Mated spermatheca5 ± 20 of 4 0.00Down
Adult carcass139 ± 584 of 4 0.00Down
Larval CNS4 ± 40 of 4 0.00Down
Larval Salivary gland3 ± 10 of 4 0.00Down
Larval midgut5625 ± 2374 of 4 1.49Up
Larval tubule4 ± 20 of 4 0.00Down
Larval hindgut34 ± 83 of 4 0.01Down
Larval fat body24 ± 201 of 4 0.00Down
Larval trachea78 ± 1252 of 4 0.02Down
Larval carcass18 ± 10 of 4 0.01Down
S2 cells (growing)5 ± 10 of 4 0.00Down
Whole fly3766 ± 1474 of 4

Looking for CG18211-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime