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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18233-RA through 18771 annotations produced 1 hits



(CG18233):

Annotation Number : CG18233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036795
Gbrowse : chr3L:18598571-18600449 (+) // 100.0 //
Probeset : 1641626_at
Accessions : protein= NP_649044;, nucleotide= NM_140787;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0005506 // iron ion bi
FlyMine data for FBgn0036795.
VDRC has 3 RNAi stocks for FBgn0036795 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye2 ± 10 of 4 0.09Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland12 ± 20 of 4 0.48Down
Crop2 ± 00 of 4 0.10Down
Midgut2 ± 10 of 4 0.10Down
Tubule4 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.11Down
Fat body1 ± 10 of 4 0.07Down
Ovary1 ± 00 of 4 0.00Down
Testis9 ± 13 of 4 0.40Down
Male accessory glands3070 ± 614 of 4123.80Up
Virgin spermatheca4 ± 00 of 4 0.17Down
Mated spermatheca2 ± 10 of 4 0.09Down
Adult carcass9 ± 40 of 4 0.40Down
Larval CNS1 ± 10 of 4 0.08Down
Larval Salivary gland4 ± 10 of 4 0.18Down
Larval midgut3 ± 00 of 4 0.16Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.11Down
Larval fat body4 ± 10 of 4 0.20Down
Larval trachea1 ± 00 of 4 0.05Down
Larval carcass3 ± 00 of 4 0.15Down
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly24 ± 34 of 4

Looking for CG18233-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime