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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18241-RA through 18771 annotations produced 1 hits



Toll-like (Toll-4):

Annotation Number : CG18241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032095
Gbrowse : chr2L:9084106-9089440 (+) // 100.0 //
Probeset : 1631398_at
Accessions : protein= NP_523519;, nucleotide= NM_078795;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotat
Interpro : 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor
FlyMine data for FBgn0032095.
Homophila reports that CG18241 is a close match (1e-11) to human gene SLEB1;TIL3;TLR5 (NP_003259), a gene associated with {Legionaire disease, susceptibility to}, 608556 (3);{Systemic lupus erythematosus, resistance to}, 601744 (3);{Systemic lupus erythematosus, susceptibility to, 1}, 601744 (2).
TRiP has 1 RNAi stocks for FBgn0032095 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032095 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.50None
Head1 ± 00 of 4 0.40None
Eye4 ± 20 of 4 1.13None
Thoracicoabdominal ganglion5 ± 20 of 4 1.40None
Salivary gland16 ± 80 of 4 4.47None
Crop8 ± 30 of 4 2.30None
Midgut3 ± 00 of 4 0.90None
Tubule5 ± 00 of 4 1.40Up
Hindgut3 ± 10 of 4 1.00None
Heart5 ± 10 of 4 1.55None
Fat body16 ± 130 of 4 4.47None
Ovary1 ± 00 of 4 0.30None
Testis10 ± 00 of 4 2.80Up
Male accessory glands8 ± 30 of 4 2.30None
Virgin spermatheca12 ± 10 of 4 3.39Up
Mated spermatheca15 ± 50 of 4 4.03None
Adult carcass2 ± 00 of 4 0.60None
Larval CNS14 ± 71 of 4 3.74None
Larval Salivary gland6 ± 10 of 4 1.64None
Larval midgut2 ± 00 of 4 0.54None
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut3 ± 00 of 4 0.87None
Larval fat body4 ± 20 of 4 1.10None
Larval trachea6 ± 30 of 4 1.65None
Larval carcass5 ± 10 of 4 1.50None
S2 cells (growing)2 ± 10 of 4 0.76None
Whole fly3 ± 10 of 4

Looking for CG18241-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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