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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18247-RA through 18771 annotations produced 1 hits



Tyrosine kinase 7 (shark):

Annotation Number : CG18247
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015295
Gbrowse : chr2R:12086927-12090388 (-) // 100.0 //
Probeset : 1623473_at
Accessions : protein= NP_524743;, nucleotide= NM_080004;
Pathway : elongation of leading edge cells // inferred from mutant phenotype /// 0023034 // intracellular signaling pathway // in
Interpro : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
FlyMine data for FBgn0015295.
BDGP gene expression has embryonic in situ data for shark: 4 pix of staining in 1 body parts.
Homophila reports that CG18247 is a close match (9e-11) to human gene ANK1;SPH2 (NP_065209), a gene associated with Spherocytosis-2 (3).
BioGrid reports that CG18247 interacts with CG2275 .
TRiP has 3 RNAi stocks for FBgn0015295 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015295 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 24 of 4 0.30Down
Head58 ± 14 of 4 0.40Down
Eye39 ± 04 of 4 0.25Down
Thoracicoabdominal ganglion45 ± 24 of 4 0.30Down
Salivary gland107 ± 34 of 4 0.68Down
Crop138 ± 44 of 4 0.90Down
Midgut114 ± 24 of 4 0.70Down
Tubule204 ± 14 of 4 1.30Up
Hindgut123 ± 24 of 4 0.80Down
Heart80 ± 94 of 4 0.51Down
Fat body76 ± 134 of 4 0.48Down
Ovary587 ± 64 of 4 3.70Up
Testis26 ± 34 of 4 0.20Down
Male accessory glands93 ± 44 of 4 0.60Down
Virgin spermatheca132 ± 54 of 4 0.83Down
Mated spermatheca141 ± 54 of 4 0.89None
Adult carcass74 ± 54 of 4 0.50Down
Larval CNS108 ± 54 of 4 0.69Down
Larval Salivary gland148 ± 74 of 4 0.94None
Larval midgut132 ± 74 of 4 0.83Down
Larval tubule179 ± 44 of 4 1.10Up
Larval hindgut195 ± 44 of 4 1.24Up
Larval fat body75 ± 64 of 4 0.50Down
Larval trachea246 ± 234 of 4 1.56Up
Larval carcass170 ± 64 of 4 1.08None
S2 cells (growing)216 ± 44 of 4 1.37Up
Whole fly158 ± 44 of 4

Looking for CG18247-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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