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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18259-RA through 18771 annotations produced 2 hits



/// (CG18259 /// CG6961):

Annotation Number : CG6961
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030956 /// FBgn0030959
Gbrowse : chrUextra:586193-587722 (-) // 71.32 // /// chrX:18680174-18682238 (-) // 99.79 // /// chrX:18675323-18677547 (-) // 96.04 //
Probeset : 1628663_s_at
Accessions : protein= NP_573324; /// NP_573325;, nucleotide= NM_133096; /// NM_133097;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0030956 /// FBgn0030959.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain175 14 of 4 0.80None
Head93 94 of 4 0.40Down
Eye77 44 of 4 0.34Down
Thoracicoabdominal ganglion124 24 of 4 0.50Down
Salivary gland132 104 of 4 0.58Down
Crop116 64 of 4 0.50Down
Midgut79 54 of 4 0.40Down
Tubule134 74 of 4 0.60Down
Hindgut97 34 of 4 0.40Down
Heart74 14 of 4 0.33Down
Fat body57 34 of 4 0.25Down
Ovary344 94 of 4 1.50Up
Testis354 54 of 4 1.60Up
Male accessory glands106 54 of 4 0.50Down
Virgin spermatheca111 14 of 4 0.49Down
Mated spermatheca128 34 of 4 0.57Down
Adult carcass82 104 of 4 0.40Down
Larval CNS232 204 of 4 1.02None
Larval Salivary gland138 34 of 4 0.61Down
Larval midgut59 44 of 4 0.26Down
Larval tubule113 64 of 4 0.50Down
Larval hindgut92 44 of 4 0.41Down
Larval fat body159 64 of 4 0.70Down
Larval trachea146 74 of 4 0.64Down
Larval carcass128 84 of 4 0.56Down
S2 cells (growing)224 54 of 4 0.99None
Whole fly227 184 of 4



(CG18259):

Annotation Number : CG18259
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030956
Gbrowse : chrUextra:586193-587722 (-) // 64.65 // /// chrX:18675264-18677521 (-) // 100.0 //
Probeset : 1624257_at
Accessions : protein= NP_573324;, nucleotide= NM_133096;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0030956.
BioGrid reports that CG18259 interacts with CG3193 CG33144 CG4095 CG4276 CG5792 CG5939 CG18259 CG18584 CG1962 CG3093 CG3151 CG3189 CG4303 CG5352 CG5692 CG5809 CG6333 CG6819 CG8368 CG9356 CG9426 .
TRiP has 1 RNAi stocks for FBgn0030956 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030956 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain373 114 of 4 1.20Up
Head228 364 of 4 0.70None
Eye139 134 of 4 0.44Down
Thoracicoabdominal ganglion376 124 of 4 1.20Up
Salivary gland104 74 of 4 0.33Down
Crop354 304 of 4 1.10None
Midgut55 14 of 4 0.20Down
Tubule128 144 of 4 0.40Down
Hindgut143 64 of 4 0.50Down
Heart106 144 of 4 0.34Down
Fat body125 234 of 4 0.40Down
Ovary794 234 of 4 2.50Up
Testis235 144 of 4 0.70Down
Male accessory glands123 44 of 4 0.40Down
Virgin spermatheca316 314 of 4 1.01None
Mated spermatheca328 294 of 4 1.05None
Adult carcass65 44 of 4 0.20Down
Larval CNS560 634 of 4 1.78Up
Larval Salivary gland285 204 of 4 0.91None
Larval midgut83 24 of 4 0.27Down
Larval tubule94 34 of 4 0.30Down
Larval hindgut273 104 of 4 0.87Down
Larval fat body529 374 of 4 1.70Up
Larval trachea242 684 of 4 0.77None
Larval carcass260 164 of 4 0.83Down
S2 cells (growing)297 114 of 4 0.95None
Whole fly314 104 of 4

Looking for CG18259-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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