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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1826-RA through 18771 annotations produced 1 hits


Annotation Number : CG1826
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030228
Gbrowse : chrX:10662569-10665732 (+) // 99.87 //
Probeset : 1639721_at
Accessions : protein= NP_572649;, nucleotide= NM_132421;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0030228.
BDGP gene expression has embryonic in situ data for CG1826: 6 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0030228 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030228 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 54 of 4 1.00None
Head93 34 of 4 0.80None
Eye76 24 of 4 0.63Down
Thoracicoabdominal ganglion106 44 of 4 0.90None
Salivary gland90 14 of 4 0.74Down
Crop91 54 of 4 0.70Down
Midgut80 44 of 4 0.70Down
Tubule73 14 of 4 0.60Down
Hindgut81 14 of 4 0.70Down
Heart49 44 of 4 0.41Down
Fat body73 34 of 4 0.60Down
Ovary222 44 of 4 1.80Up
Testis288 64 of 4 2.40Up
Male accessory glands64 14 of 4 0.50Down
Virgin spermatheca66 64 of 4 0.55Down
Mated spermatheca81 64 of 4 0.66Down
Adult carcass117 44 of 4 1.00None
Larval CNS96 44 of 4 0.79None
Larval Salivary gland84 34 of 4 0.69Down
Larval midgut73 44 of 4 0.60Down
Larval tubule55 34 of 4 0.50Down
Larval hindgut71 24 of 4 0.58Down
Larval fat body61 84 of 4 0.50Down
Larval trachea50 34 of 4 0.41Down
Larval carcass69 04 of 4 0.56Down
S2 cells (growing)109 24 of 4 0.89None
Whole fly122 104 of 4

Looking for CG1826-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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