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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18265-RA through 18771 annotations produced 1 hits



(CG18265):

Annotation Number : CG18265
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036725
Gbrowse : chr3L:17432510-17448383 (+) // 100.0 //
Probeset : 1632141_at
Accessions : protein= NP_648982;, nucleotide= NM_140725;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0036725.
TRiP has 1 RNAi stocks for FBgn0036725 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036725 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 ± 34 of 443.50Up
Head11 ± 14 of 4 6.50Up
Eye7 ± 13 of 4 4.14Up
Thoracicoabdominal ganglion18 ± 24 of 410.60Up
Salivary gland10 ± 21 of 4 5.94None
Crop6 ± 11 of 4 3.90None
Midgut6 ± 13 of 4 3.50Up
Tubule4 ± 00 of 4 2.50Up
Hindgut4 ± 01 of 4 2.70Up
Heart3 ± 10 of 4 1.77None
Fat body12 ± 24 of 4 7.35Up
Ovary0 ± 00 of 4 0.40None
Testis1 ± 00 of 4 1.10None
Male accessory glands7 ± 11 of 4 4.40Up
Virgin spermatheca4 ± 01 of 4 2.72Up
Mated spermatheca5 ± 12 of 4 3.19None
Adult carcass3 ± 20 of 4 1.90None
Larval CNS90 ± 214 of 452.42Up
Larval Salivary gland3 ± 10 of 4 1.80None
Larval midgut1 ± 00 of 4 0.97None
Larval tubule0 ± 00 of 4 0.40None
Larval hindgut4 ± 00 of 4 2.62Up
Larval fat body3 ± 10 of 4 1.80None
Larval trachea0 ± 00 of 4 0.36None
Larval carcass3 ± 10 of 4 1.78None
S2 cells (growing)0 ± 00 of 4 0.25None
Whole fly1 ± 01 of 4

Looking for CG18265-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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