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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18269-RA through 18771 annotations produced 1 hits



(CG18269):

Annotation Number : CG18269
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031719
Gbrowse : chr2L:5552045-5552648 (+) // 100.0 //
Probeset : 1623548_at
Accessions : protein= NP_608940;, nucleotide= NM_135096;
FlyMine data for FBgn0031719.
VDRC has 2 RNAi stocks for FBgn0031719 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.70None
Head2 10 of 4 1.10None
Eye4 00 of 4 2.43None
Thoracicoabdominal ganglion2 10 of 4 1.30None
Salivary gland5 10 of 4 2.68None
Crop4 10 of 4 2.60None
Midgut2 00 of 4 1.10None
Tubule2 00 of 4 1.40None
Hindgut1 00 of 4 0.60None
Heart2 00 of 4 1.09None
Fat body3 10 of 4 1.80None
Ovary1 00 of 4 0.90None
Testis4 10 of 4 2.10None
Male accessory glands2 00 of 4 1.20None
Virgin spermatheca2 00 of 4 1.42None
Mated spermatheca2 10 of 4 1.22None
Adult carcass5 10 of 4 3.00None
Larval CNS0 00 of 4 0.43None
Larval Salivary gland3 00 of 4 1.66None
Larval midgut1 00 of 4 0.77None
Larval tubule6 10 of 4 3.70Up
Larval hindgut2 00 of 4 1.15None
Larval fat body4 10 of 4 2.20None
Larval trachea4 20 of 4 2.61None
Larval carcass1 00 of 4 1.00None
S2 cells (growing)2 00 of 4 1.54None
Whole fly1 00 of 4

Looking for CG18269-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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