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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1827-RA through 18771 annotations produced 1 hits



(CG1827):

Annotation Number : CG1827
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033431
Gbrowse : chr2R:5476610-5478107 (+) // 100.0 //
Probeset : 1637955_a_at
Accessions : protein= NP_610504; /// NP_724808;, nucleotide= NM_136660; /// NM_165684;
Pathway : 0005764 // lysosome // inferred from sequence or structural similarity
Interpro : 0003948 // N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0033431.
BDGP gene expression has embryonic in situ data for CG1827: 10 pix of staining in 2 body parts.
Homophila reports that CG1827 is a close match (3e-83) to human gene AGA (NP_000018), a gene associated with Aspartylglucosaminuria (3).
VDRC has 3 RNAi stocks for FBgn0033431 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain80 ± 04 of 4 0.90None
Head104 ± 54 of 4 1.20Up
Eye95 ± 74 of 4 1.11None
Thoracicoabdominal ganglion95 ± 44 of 4 1.10None
Salivary gland121 ± 64 of 4 1.42Up
Crop51 ± 64 of 4 0.60Down
Midgut98 ± 34 of 4 1.20None
Tubule187 ± 254 of 4 2.20Up
Hindgut84 ± 44 of 4 1.00None
Heart508 ± 404 of 4 5.94Up
Fat body240 ± 174 of 4 2.80Up
Ovary38 ± 14 of 4 0.40Down
Testis260 ± 104 of 4 3.00Up
Male accessory glands360 ± 224 of 4 4.20Up
Virgin spermatheca260 ± 174 of 4 3.04Up
Mated spermatheca223 ± 84 of 4 2.60Up
Adult carcass172 ± 54 of 4 2.00Up
Larval CNS63 ± 84 of 4 0.74Down
Larval Salivary gland141 ± 144 of 4 1.65Up
Larval midgut231 ± 174 of 4 2.70Up
Larval tubule487 ± 84 of 4 5.70Up
Larval hindgut144 ± 114 of 4 1.69Up
Larval fat body389 ± 674 of 4 4.60Up
Larval trachea96 ± 164 of 4 1.13None
Larval carcass119 ± 94 of 4 1.39Up
S2 cells (growing)225 ± 34 of 4 2.64Up
Whole fly85 ± 54 of 4

Looking for CG1827-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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