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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG18281-RA through 18771 annotations produced 1 hits


(CG18281):

Annotation Number : CG18281
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037003
Gbrowse : chr3L:20492935-20494600 (+) // 100.0 //
Probeset : 1625036_at
Accessions : protein= NP_649236;, nucleotide= NM_140979;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0015520 // tetracycline:hydrogen antiporter activity // inferred from electronic annotation
FlyMine data for FBgn0037003.
VDRC has 4 RNAi stocks for FBgn0037003 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head3 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland8 ± 40 of 4 0.25Down
Crop1 ± 00 of 4 0.10Down
Midgut2 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.06Down
Fat body2 ± 10 of 4 0.07Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 11 of 4 0.10Down
Male accessory glands878 ± 294 of 424.40Up
Virgin spermatheca2 ± 10 of 4 0.08Down
Mated spermatheca3 ± 10 of 4 0.10Down
Adult carcass3 ± 20 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.07Down
Larval Salivary gland2 ± 10 of 4 0.08Down
Larval midgut2 ± 10 of 4 0.08Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea2 ± 00 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly36 ± 24 of 4

Looking for CG18281-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime