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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18285-RA through 18771 annotations produced 1 hits



igloo (igl):

Annotation Number : CG18285
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013467
Gbrowse : chr2R:11042943-11077799 (+) // 100.0 //
Probeset : 1633157_a_at
Accessions : protein= NP_477060; /// NP_477061;, nucleotide= NM_057712; /// NM_057713;
Interpro : 0005516 // calmodulin binding // inferred from direct assay /// 0032027 // myosin light chain binding // inferred from r
FlyMine data for FBgn0013467.
BDGP gene expression has embryonic in situ data for igl: 23 pix of staining in 7 body parts.
TRiP has 1 RNAi stocks for FBgn0013467 available for purchase.
VDRC has 1 RNAi stocks for FBgn0013467 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1598 574 of 421.40Up
Head801 664 of 410.70Up
Eye676 714 of 4 9.06Up
Thoracicoabdominal ganglion941 354 of 412.60Up
Salivary gland1 00 of 4 0.02Down
Crop3 00 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule3 00 of 4 0.10Down
Hindgut2 00 of 4 0.00Down
Heart4 00 of 4 0.06Down
Fat body6 02 of 4 0.08Down
Ovary1 00 of 4 0.00Down
Testis1 10 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca3 01 of 4 0.04Down
Mated spermatheca3 00 of 4 0.05Down
Adult carcass21 24 of 4 0.30Down
Larval CNS490 684 of 4 6.58Up
Larval Salivary gland2 10 of 4 0.03Down
Larval midgut2 10 of 4 0.04Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.01Down
Larval fat body2 10 of 4 0.00Down
Larval trachea8 141 of 4 0.12Down
Larval carcass9 03 of 4 0.12Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly74 64 of 4

Looking for CG18285-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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