Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1830-RC through 18771 annotations produced 1 hits



chrX:11589185-11597790 (+) // 99.84 // (phosphorylase kinase gamma):

Annotation Number : CG1830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623842_a_at
Accessions : protein= , nucleotide= NP_511129; /// NP_727548; /// NP_727549;
Pathway : 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0006007 // glucose catabolic process
Interpro : 0005964 // phosphorylase kinase complex // inferred from electronic annotation /// 0005964 // phosphorylase kinase compl
FlyMine data for full length.
Homophila reports that CG1830 is a close match (4e-11) to human gene FGFR4 (NP_998812), a gene associated with {Cancer progression/metastasis} (3).
BioGrid reports that CG1830 interacts with CG8364 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain458 ± 344 of 4 2.00Up
Head296 ± 174 of 4 1.30Up
Eye308 ± 44 of 4 1.32Up
Thoracicoabdominal ganglion482 ± 174 of 4 2.10Up
Salivary gland229 ± 294 of 4 0.98None
Crop266 ± 44 of 4 1.10None
Midgut114 ± 34 of 4 0.50Down
Tubule3176 ± 1314 of 413.60Up
Hindgut298 ± 104 of 4 1.30Up
Heart450 ± 314 of 4 1.93Up
Fat body447 ± 184 of 4 1.91Up
Ovary269 ± 54 of 4 1.10None
Testis143 ± 124 of 4 0.60Down
Male accessory glands100 ± 84 of 4 0.40Down
Virgin spermatheca644 ± 164 of 4 2.75Up
Mated spermatheca508 ± 294 of 4 2.17Up
Adult carcass554 ± 344 of 4 2.40Up
Larval CNS216 ± 164 of 4 0.92None
Larval Salivary gland112 ± 34 of 4 0.48Down
Larval midgut96 ± 114 of 4 0.41Down
Larval tubule260 ± 214 of 4 1.10None
Larval hindgut92 ± 24 of 4 0.40Down
Larval fat body153 ± 64 of 4 0.70Down
Larval trachea220 ± 174 of 4 0.94None
Larval carcass382 ± 414 of 4 1.63Up
S2 cells (growing)149 ± 24 of 4 0.64Down
Whole fly234 ± 154 of 4

Looking for CG1830-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime