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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG18301-RA through 18771 annotations produced 1 hits


(CG18301):

Annotation Number : CG18301
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032265
Gbrowse : chr2L:10531851-10533576 (+) // 100.0 //
Probeset : 1632393_at
Accessions : protein= NP_609419;, nucleotide= NM_135575;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032265.
Homophila reports that CG18301 is a close match (2e-63) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
BioGrid reports that CG18301 interacts with CG3880 CG8266 .
VDRC has 3 RNAi stocks for FBgn0032265 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.02Down
Crop4 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart6 ± 10 of 4 0.05Down
Fat body11 ± 40 of 4 0.08Down
Ovary2 ± 00 of 4 0.00Down
Testis4 ± 00 of 4 0.00Down
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca9 ± 30 of 4 0.07Down
Mated spermatheca8 ± 21 of 4 0.06Down
Adult carcass8 ± 51 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland5 ± 10 of 4 0.04Down
Larval midgut2 ± 10 of 4 0.02Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.01Down
Larval fat body10 ± 30 of 4 0.10Down
Larval trachea6 ± 71 of 4 0.05Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly137 ± 254 of 4

Looking for CG18301-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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