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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18315-RA through 18771 annotations produced 1 hits



Adenine phosphoribosyltransferase (Aprt):

Annotation Number : CG18315
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000109
Gbrowse : chr3L:1883891-1884885 (-) // 100.0 //
Probeset : 1628492_at
Accessions : protein= NP_476637;, nucleotide= NM_057289;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement
Interpro : "0003999 // adenine phosphoribosyltransferase activity // inferred from electronic annotation /// 0003999 // adenine pho
FlyMine data for FBgn0000109.
Homophila reports that CG18315 is a close match (1e-28) to human gene APRT (NP_001025189), a gene associated with Urolithiasis, 2,8-dihydroxyadenine (3).
BioGrid reports that CG18315 interacts with CG5941 .
VDRC has 5 RNAi stocks for FBgn0000109 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 14 of 4 0.40Down
Head159 114 of 4 1.10None
Eye112 74 of 4 0.76Down
Thoracicoabdominal ganglion71 54 of 4 0.50Down
Salivary gland256 184 of 4 1.73Up
Crop161 64 of 4 1.10None
Midgut284 184 of 4 1.90Up
Tubule503 184 of 4 3.40Up
Hindgut242 104 of 4 1.60Up
Heart170 44 of 4 1.15Up
Fat body292 164 of 4 1.98Up
Ovary202 54 of 4 1.40Up
Testis32 24 of 4 0.20Down
Male accessory glands229 174 of 4 1.50Up
Virgin spermatheca785 364 of 4 5.29Up
Mated spermatheca658 444 of 4 4.44Up
Adult carcass211 194 of 4 1.40Up
Larval CNS89 104 of 4 0.60Down
Larval Salivary gland275 114 of 4 1.86Up
Larval midgut269 104 of 4 1.81Up
Larval tubule366 94 of 4 2.50Up
Larval hindgut233 94 of 4 1.58Up
Larval fat body564 654 of 4 3.80Up
Larval trachea126 114 of 4 0.86Down
Larval carcass114 44 of 4 0.77Down
S2 cells (growing)102 84 of 4 0.69Down
Whole fly148 54 of 4

Looking for CG18315-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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