FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG18319-RA through 18771 annotations produced 1 hits

bendless (ben):

Annotation Number : CG18319
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000173
Gbrowse : chrX:13890386-13893841 (+) // 100.0 //
Probeset : 1641279_at
Accessions : protein= NP_001162752; /// NP_511150;, nucleotide= NM_001169281; /// NM_078595;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity //
FlyMine data for FBgn0000173.
Homophila reports that CG18319 is a close match (2e-11) to human gene RAD6A;UBE2A (NP_861442), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG18319 interacts with CG5140 .
TRiP has 1 RNAi stocks for FBgn0000173 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000173 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	996 ± 58	4 of 4	2.40	Up
Head	1015 ± 105	4 of 4	2.50	Up
Eye	1068 ± 23	4 of 4	2.62	Up
Thoracicoabdominal ganglion	1092 ± 9	4 of 4	2.70	Up
Salivary gland	478 ± 14	4 of 4	1.18	None
Crop	1040 ± 51	4 of 4	2.60	Up
Midgut	515 ± 19	4 of 4	1.30	None
Tubule	676 ± 30	4 of 4	1.70	Up
Hindgut	801 ± 43	4 of 4	2.00	Up
Heart	518 ± 39	4 of 4	1.27	None
Fat body	984 ± 105	4 of 4	2.42	Up
Ovary	221 ± 8	4 of 4	0.50	Down
Testis	123 ± 9	4 of 4	0.30	Down
Male accessory glands	629 ± 27	4 of 4	1.50	Up
Virgin spermatheca	784 ± 66	4 of 4	1.93	Up
Mated spermatheca	842 ± 37	4 of 4	2.07	Up
Adult carcass	481 ± 12	4 of 4	1.20	None
Larval CNS	1376 ± 184	4 of 4	3.38	Up
Larval Salivary gland	907 ± 78	4 of 4	2.23	Up
Larval midgut	1217 ± 95	4 of 4	2.99	Up
Larval tubule	1612 ± 78	4 of 4	4.00	Up
Larval hindgut	1409 ± 46	4 of 4	3.46	Up
Larval fat body	1033 ± 111	4 of 4	2.50	Up
Larval trachea	678 ± 19	4 of 4	1.67	Up
Larval carcass	1082 ± 36	4 of 4	2.66	Up
S2 cells (growing)	647 ± 44	4 of 4	1.59	Up
Whole fly	407 ± 46	4 of 4

Looking for CG18319-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720