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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1832-RA through 18771 annotations produced 1 hits



(CG1832):

Annotation Number : CG1832
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032979
Gbrowse : chr2L:22165963-22169161 (-) // 100.0 //
Probeset : 1629663_at
Accessions : protein= NP_001014498; /// NP_610137;, nucleotide= NM_001014498; /// NM_136293;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0032979.
BDGP gene expression has embryonic in situ data for CG1832: 7 pix of staining in 3 body parts.
Homophila reports that CG1832 is a close match (1e-12) to human gene BCL11A;CTIP1;EVI9;HBFQTL5;KIAA1809 (NP_075044), a gene associated with Fetal hemoglobin quantitative trait locus 5, 142335 (3).
BioGrid reports that CG1832 interacts with CG7987 .
TRiP has 1 RNAi stocks for FBgn0032979 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032979 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain308 ± 64 of 4 0.90None
Head212 ± 124 of 4 0.60Down
Eye175 ± 74 of 4 0.50Down
Thoracicoabdominal ganglion219 ± 74 of 4 0.60Down
Salivary gland294 ± 144 of 4 0.84None
Crop223 ± 104 of 4 0.60Down
Midgut187 ± 34 of 4 0.50Down
Tubule324 ± 94 of 4 0.90Down
Hindgut177 ± 44 of 4 0.50Down
Heart171 ± 84 of 4 0.49Down
Fat body166 ± 254 of 4 0.47Down
Ovary783 ± 74 of 4 2.20Up
Testis280 ± 64 of 4 0.80None
Male accessory glands222 ± 54 of 4 0.60Down
Virgin spermatheca214 ± 104 of 4 0.61Down
Mated spermatheca228 ± 84 of 4 0.65Down
Adult carcass163 ± 94 of 4 0.50Down
Larval CNS463 ± 244 of 4 1.32Up
Larval Salivary gland320 ± 184 of 4 0.91None
Larval midgut155 ± 74 of 4 0.44Down
Larval tubule210 ± 64 of 4 0.60Down
Larval hindgut190 ± 44 of 4 0.54Down
Larval fat body211 ± 244 of 4 0.60Down
Larval trachea258 ± 44 of 4 0.74Down
Larval carcass174 ± 134 of 4 0.50Down
S2 cells (growing)449 ± 24 of 4 1.28Up
Whole fly351 ± 244 of 4

Looking for CG1832-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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