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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18324-RB through 18771 annotations produced 1 hits



(CG18324):

Annotation Number : CG18324
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033905
Gbrowse : chr2R:10056360-10057737 (+) // 100.0 //
Probeset : 1632700_a_at
Accessions : protein= NP_610935; /// NP_725361;, nucleotide= NM_137091; /// NM_166033;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0033905.
BDGP gene expression has embryonic in situ data for CG18324: 4 pix of staining in 1 body parts.
Homophila reports that CG18324 is a close match (3e-11) to human gene UCP3 (NP_073714), a gene associated with {Obesity, severe, and type II diabetes}, 601665 (3).
TRiP has 1 RNAi stocks for FBgn0033905 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033905 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 ± 24 of 4 0.90None
Head66 ± 44 of 4 0.70None
Eye135 ± 74 of 4 1.50Up
Thoracicoabdominal ganglion87 ± 34 of 4 1.00None
Salivary gland105 ± 44 of 4 1.17None
Crop139 ± 34 of 4 1.50Up
Midgut208 ± 64 of 4 2.30Up
Tubule2298 ± 1004 of 425.50Up
Hindgut160 ± 14 of 4 1.80Up
Heart103 ± 24 of 4 1.15None
Fat body117 ± 184 of 4 1.30None
Ovary44 ± 14 of 4 0.50Down
Testis22 ± 24 of 4 0.20Down
Male accessory glands93 ± 44 of 4 1.00None
Virgin spermatheca90 ± 54 of 4 1.00None
Mated spermatheca117 ± 54 of 4 1.30Up
Adult carcass111 ± 34 of 4 1.20None
Larval CNS61 ± 54 of 4 0.68Down
Larval Salivary gland69 ± 54 of 4 0.76None
Larval midgut168 ± 244 of 4 1.87Up
Larval tubule143 ± 74 of 4 1.60Up
Larval hindgut125 ± 84 of 4 1.39Up
Larval fat body51 ± 44 of 4 0.60Down
Larval trachea80 ± 94 of 4 0.89None
Larval carcass84 ± 54 of 4 0.94None
S2 cells (growing)84 ± 34 of 4 0.93None
Whole fly90 ± 84 of 4

Looking for CG18324-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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