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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18327-RA through 18771 annotations produced 1 hits



(CG18327):

Annotation Number : CG18327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033904
Gbrowse : chr2R:10054580-10055699 (+) // 100.0 //
Probeset : 1633434_at
Accessions : protein= NP_610934;, nucleotide= NM_137090;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0033904.
Homophila reports that CG18327 is a close match (2e-13) to human gene SLC25A22;GC1 (NP_078974), a gene associated with Epilepsy, neonatal myoclonic, with suppression-burst pattern, 609304 (3).
VDRC has 1 RNAi stocks for FBgn0033904 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 21 of 4 0.40Down
Head43 34 of 4 1.00None
Eye18 14 of 4 0.44Down
Thoracicoabdominal ganglion11 10 of 4 0.30Down
Salivary gland17 50 of 4 0.42Down
Crop5 10 of 4 0.10Down
Midgut64 24 of 4 1.50Up
Tubule441 564 of 410.30Up
Hindgut33 61 of 4 0.80None
Heart55 54 of 4 1.29None
Fat body200 224 of 4 4.69Up
Ovary3 10 of 4 0.10Down
Testis3 10 of 4 0.10Down
Male accessory glands14 20 of 4 0.30Down
Virgin spermatheca104 114 of 4 2.44Up
Mated spermatheca138 44 of 4 3.23Up
Adult carcass118 124 of 4 2.80Up
Larval CNS9 20 of 4 0.21Down
Larval Salivary gland5 10 of 4 0.13Down
Larval midgut28 21 of 4 0.67Down
Larval tubule49 64 of 4 1.20None
Larval hindgut8 10 of 4 0.21Down
Larval fat body15 30 of 4 0.40Down
Larval trachea7 41 of 4 0.17Down
Larval carcass4 10 of 4 0.11Down
S2 cells (growing)8 00 of 4 0.19Down
Whole fly42 44 of 4

Looking for CG18327-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime