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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18348-RA through 18771 annotations produced 1 hits



CG18348 (Cpr67Fb):

Annotation Number : CG18348
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036110
Gbrowse : chr3L:10887290-10887723 (+) // 100.0 //
Probeset : 1638742_at
Accessions : protein= NP_648420;, nucleotide= NM_140163;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0036110.
BioGrid reports that CG18348 interacts with CG5094 CG6357 .
VDRC has 3 RNAi stocks for FBgn0036110 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 11 of 4 0.20Down
Head14 21 of 4 0.30Down
Eye8 10 of 4 0.17Down
Thoracicoabdominal ganglion12 12 of 4 0.30Down
Salivary gland58 43 of 4 1.20None
Crop14 21 of 4 0.30Down
Midgut10 20 of 4 0.20Down
Tubule90 224 of 4 1.90None
Hindgut40 34 of 4 0.80None
Heart3 10 of 4 0.06Down
Fat body19 43 of 4 0.41Down
Ovary8 01 of 4 0.20Down
Testis13 13 of 4 0.30Down
Male accessory glands15 50 of 4 0.30Down
Virgin spermatheca15 12 of 4 0.33Down
Mated spermatheca22 42 of 4 0.47Down
Adult carcass16 50 of 4 0.30Down
Larval CNS11 20 of 4 0.23Down
Larval Salivary gland12 20 of 4 0.25Down
Larval midgut9 20 of 4 0.19Down
Larval tubule14 02 of 4 0.30Down
Larval hindgut12 22 of 4 0.27Down
Larval fat body82 234 of 4 1.70None
Larval trachea409 314 of 4 8.46Up
Larval carcass17 20 of 4 0.36Down
S2 cells (growing)4 10 of 4 0.10Down
Whole fly48 44 of 4

Looking for CG18348-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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