Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG18396-RA through 18771 annotations produced 1 hits


Male-specific RNA 98Cb (Mst98Cb):

Annotation Number : CG18396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004171
Gbrowse : chr3R:24118524-24119589 (+) // 100.0 //
Probeset : 1631436_at
Accessions : protein= NP_524539;, nucleotide= NM_079815;
FlyMine data for FBgn0004171.
BDGP gene expression has embryonic in situ data for Mst98Cb: 4 pix of staining in 1 body parts.
BioGrid reports that CG18396 interacts with CG12212 CG13363 CG15032 CG15781 CG17666 CG17777 CG1981 CG12701 Dmel CG34324 CG13159 CG13384 CG1372 CG14206 CG15422 CG1696 CG1838 CG2995 CG31243 CG31626 CG33152 CG3333 CG3725 CG3792 CG5099 CG7017 CG8871 CG8947 CG9031 CG9653 Dmel CR32865 CG6246 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.00Down
Crop2 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 10 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body1 ± 00 of 4 0.00Down
Ovary1 ± 00 of 4 0.00Down
Testis2448 ± 934 of 4 7.20Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 10 of 4 0.01Down
Mated spermatheca3 ± 10 of 4 0.01Down
Adult carcass6 ± 20 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland0 ± 00 of 4 0.00Down
Larval midgut1 ± 00 of 4 0.00Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body260 ± 1433 of 4 0.80None
Larval trachea13 ± 161 of 4 0.04Down
Larval carcass4 ± 10 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly338 ± 304 of 4

Looking for CG18396-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime