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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG18404-RA through 18771 annotations produced 1 hits



(CG18404):

Annotation Number : CG18404
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039761
Gbrowse : chr3R:26078903-26079820 (+) // 100.0 //
Probeset : 1627895_at
Accessions : protein= NP_651786;, nucleotide= NM_143529;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039761.
BioGrid reports that CG18404 interacts with CG8787 CG4434 .
VDRC has 3 RNAi stocks for FBgn0039761 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head5 ± 21 of 4 0.00Down
Eye3 ± 11 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland11 ± 51 of 4 0.02Down
Crop5 ± 10 of 4 0.00Down
Midgut4185 ± 1884 of 4 7.50Up
Tubule4 ± 10 of 4 0.00Down
Hindgut7 ± 20 of 4 0.00Down
Heart2 ± 00 of 4 0.00Down
Fat body10 ± 31 of 4 0.02Down
Ovary3 ± 10 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands8 ± 10 of 4 0.00Down
Virgin spermatheca4 ± 11 of 4 0.01Down
Mated spermatheca4 ± 10 of 4 0.01Down
Adult carcass11 ± 20 of 4 0.00Down
Larval CNS6 ± 10 of 4 0.01Down
Larval Salivary gland4 ± 20 of 4 0.01Down
Larval midgut351 ± 474 of 4 0.63Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut7 ± 00 of 4 0.01Down
Larval fat body13 ± 21 of 4 0.00Down
Larval trachea4 ± 10 of 4 0.01Down
Larval carcass8 ± 20 of 4 0.02Down
S2 cells (growing)7 ± 11 of 4 0.01Down
Whole fly556 ± 594 of 4

Looking for CG18404-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime